View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17595_low_3 (Length: 347)
Name: NF17595_low_3
Description: NF17595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17595_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 163 - 344
Target Start/End: Original strand, 35838008 - 35838189
Alignment:
| Q |
163 |
tctggtctgattttctctgtgttactattgatgaatgatgatgctatgttatgttactacacaacacttagaagagtgnnnnnnnnnctgaggcggctaa |
262 |
Q |
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| T |
35838008 |
tctggtctgattttctctgtgttactgttgatgaatgatgatgctatgttatgttactacacaacacttagaagagtggtttttttcctgaggcggctaa |
35838107 |
T |
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| Q |
263 |
agaggcaatggtaatattatgaggtgggtggggttgggtttgcttttgcctctacaagtagaaggaactgcgtgcgtgtctt |
344 |
Q |
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| T |
35838108 |
agaggcaatggtaatattatgaggtgggtggggttgggtttgcttttgcctctacaagtagaaggaactgcgtgcgtgtctt |
35838189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 35837842 - 35837942
Alignment:
| Q |
7 |
catgggctgcatctgcatcaggtgctgctgcattttgaaatttctgttaaatatttttatctgagttcaaatccaaacaaaggggtgtgaccctgtgacc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35837842 |
catgggctgcatctgcatcaggtgctgctgcattttgaaatttctgttaaatatttttatctgagttcaaatccaaacaaaggggtatgaccctgtgacc |
35837941 |
T |
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| Q |
107 |
t |
107 |
Q |
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| T |
35837942 |
t |
35837942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 47685125 - 47685091
Alignment:
| Q |
7 |
catgggctgcatctgcatcaggtgctgctgcattt |
41 |
Q |
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| T |
47685125 |
catgggctgcatctgcatcaggtgctgctgcattt |
47685091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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