View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17595_low_5 (Length: 267)

Name: NF17595_low_5
Description: NF17595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17595_low_5
NF17595_low_5
[»] chr5 (4 HSPs)
chr5 (26-243)||(16291930-16292138)
chr5 (85-155)||(36759185-36759255)
chr5 (99-144)||(34458026-34458071)
chr5 (235-267)||(16292320-16292352)
[»] chr3 (8 HSPs)
chr3 (89-176)||(44846956-44847043)
chr3 (99-176)||(42993469-42993546)
chr3 (63-176)||(44006395-44006508)
chr3 (101-153)||(37248891-37248943)
chr3 (99-178)||(44810663-44810742)
chr3 (121-153)||(37717045-37717077)
chr3 (99-138)||(38108810-38108849)
chr3 (26-60)||(47047241-47047275)
[»] chr2 (7 HSPs)
chr2 (62-177)||(4425877-4425992)
chr2 (99-176)||(20897432-20897509)
chr2 (100-138)||(44070785-44070823)
chr2 (97-138)||(34456973-34457014)
chr2 (99-176)||(41474724-41474800)
chr2 (99-155)||(40614744-40614800)
chr2 (116-176)||(41474601-41474661)
[»] chr7 (10 HSPs)
chr7 (63-181)||(27543683-27543801)
chr7 (89-176)||(47317777-47317864)
chr7 (99-155)||(18792633-18792689)
chr7 (60-138)||(27866850-27866928)
chr7 (63-176)||(18791929-18792042)
chr7 (101-178)||(31594311-31594388)
chr7 (101-153)||(20708230-20708282)
chr7 (101-153)||(20876274-20876326)
chr7 (101-153)||(47944392-47944444)
chr7 (101-153)||(47949822-47949874)
[»] chr4 (11 HSPs)
chr4 (63-177)||(43036438-43036552)
chr4 (69-176)||(40729880-40729987)
chr4 (99-140)||(47110057-47110098)
chr4 (101-177)||(2333829-2333905)
chr4 (99-168)||(32430492-32430561)
chr4 (89-138)||(50825966-50826015)
chr4 (93-177)||(43035766-43035850)
chr4 (100-138)||(22436075-22436113)
chr4 (84-178)||(47110734-47110828)
chr4 (126-176)||(52658007-52658057)
chr4 (119-175)||(17045012-17045068)
[»] chr8 (11 HSPs)
chr8 (99-176)||(6253587-6253664)
chr8 (101-153)||(33073700-33073752)
chr8 (99-178)||(6253300-6253379)
chr8 (99-138)||(20086230-20086269)
chr8 (99-176)||(233929-234006)
chr8 (99-176)||(710340-710417)
chr8 (99-176)||(747552-747629)
chr8 (99-176)||(871447-871524)
chr8 (100-138)||(8037288-8037326)
chr8 (89-138)||(32472429-32472478)
chr8 (126-178)||(24803744-24803796)
[»] scaffold0146 (2 HSPs)
scaffold0146 (89-156)||(29977-30044)
scaffold0146 (89-156)||(32319-32386)
[»] chr1 (8 HSPs)
chr1 (64-155)||(37770215-37770306)
chr1 (99-176)||(33216334-33216411)
chr1 (85-178)||(18982055-18982148)
chr1 (99-138)||(18981521-18981560)
chr1 (69-176)||(21761277-21761384)
chr1 (99-177)||(21762046-21762124)
chr1 (123-176)||(33216985-33217038)
chr1 (99-176)||(42805868-42805945)
[»] chr6 (2 HSPs)
chr6 (99-176)||(33820097-33820174)
chr6 (102-138)||(6979019-6979055)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 16291930 - 16292138
Alignment:
Q  26 tggaatgaaaaaatgagaaagttgtgaggaggatgaattcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||    ||||||| || |||||||||||||||| ||||||| |||||||    
T  16291930 tggaatgaaaaaatgagaaagttgtgaggaggatgaattcagcggtagtt-ac----gtcggattctaaatgatagttaactactgctggaggcatttaa 16292024  T
Q  126 gtattttacttgtattattgtgaagtttttaatattagaaaaacaattttctagcatttttcatattcaaaaaagtctctcactcagtcagacattactc 225  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||    || ||||| |||||||||    
T  16292025 gtattttacttgtgttattgtgaaatttttaatattagaaaaacaattttttagcatttttcatattaaaaaaagtct----ctaagtcaaacattactc 16292120  T
Q  226 ataatgggtattcaagaa 243  Q
    ||||||||||||||||||    
T  16292121 ataatgggtattcaagaa 16292138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 36759185 - 36759255
Alignment:
Q  85 cggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagttttt 155  Q
    ||||||||||| | ||||||||||||||||| | |||| | ||||||||||||| | | ||||||||||||    
T  36759185 cggatcctcaacggtagttaactaccgctgggggcattcaggtattttacttgtgtcaatgtgaagttttt 36759255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 34458071 - 34458026
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattatt 144  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||    
T  34458071 tagttaactaccgctagagccatttaagtattttacttgtgttatt 34458026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 16292320 - 16292352
Alignment:
Q  235 attcaagaaatgaatcatcataaatgtatatct 267  Q
    |||||||||||||||||||||||||||||||||    
T  16292320 attcaagaaatgaatcatcataaatgtatatct 16292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 44847043 - 44846956
Alignment:
Q  89 tcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||||| | |||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||| ||| | |||||| ||||||||    
T  44847043 tcctcaacggtagttaactaccgctggaggtatttaagtattttacttgtgttaatgtgaagttttcaatgtcagaaaagcaattttc 44846956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 42993469 - 42993546
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||||| ||| |||| ||  ||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||    
T  42993469 tagttaaatactgctgaaggtatttaagtattttacttgtgtcattgtgaagttttcaatatcagaaaaacaattttc 42993546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 44006508 - 44006395
Alignment:
Q  63 ttcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatatta 162  Q
    ||||| ||||||| |||| || ||| |||| || | ||||||||||||||||| | |||||||||||||||||| | | |||||||| |||| ||| | |    
T  44006508 ttcagcggtagttaactgctgccggttcctgaacggtagttaactaccgctgggggcatttaagtattttacttatgtcattgtgaaattttcaatgtca 44006409  T
Q  163 gaaaaacaattttc 176  Q
    ||||| ||||||||    
T  44006408 gaaaagcaattttc 44006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 37248943 - 37248891
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagttt 153  Q
    |||||| |||||| |||||||||||||||||||| |||||||| |||||||||    
T  37248943 gttaacaaccgctagagacatttaagtattttacctgtattatagtgaagttt 37248891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 44810663 - 44810742
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttcta 178  Q
    |||||||||||||||||||  ||||||||||||||||| | | ||||| ||||||| ||  | |||||| ||||||||||    
T  44810663 tagttaactaccgctggaggtatttaagtattttacttttgtcattgtaaagttttcaacgtcagaaaagcaattttcta 44810742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 37717077 - 37717045
Alignment:
Q  121 tttaagtattttacttgtattattgtgaagttt 153  Q
    |||||||||||||||||||||||||||||||||    
T  37717077 tttaagtattttacttgtattattgtgaagttt 37717045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 38108849 - 38108810
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgt 138  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  38108849 tagttaactaccgctggaggtatttaagtattttacttgt 38108810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 47047275 - 47047241
Alignment:
Q  26 tggaatgaaaaaatgagaaagttgtgaggaggatg 60  Q
    ||||||||||||||||||||||| |||||||||||    
T  47047275 tggaatgaaaaaatgagaaagttatgaggaggatg 47047241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 4425992 - 4425877
Alignment:
Q  62 attcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatatt 161  Q
    |||||| ||||||| |||| |||||| ||||||| | ||||||| ||| | ||| | |||||||||||||||||||| ||||||||||||||| ||| |     
T  4425992 attcagcggtagttaactgttgtcgggtcctcaacggtagttaagtactgttgggggcatttaagtattttacttgtgttattgtgaagttttcaatgtc 4425893  T
Q  162 agaaaaacaattttct 177  Q
    |||||| ||| |||||    
T  4425892 agaaaagcaactttct 4425877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 20897432 - 20897509
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||| |||||||||| ||||||||||||||||||| ||| || || |||||||||| || |||||||||||||||||    
T  20897432 tagtttactaccgctgaagacatttaagtattttacatgtgtttttatgaagtttttgatgttagaaaaacaattttc 20897509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 44070823 - 44070785
Alignment:
Q  100 agttaactaccgctggagacatttaagtattttacttgt 138  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  44070823 agttaactaccgctggaggcatttacgtattttacttgt 44070785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 34457014 - 34456973
Alignment:
Q  97 gatagttaactaccgctggagacatttaagtattttacttgt 138  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  34457014 gatagttaactaccgctgagggcatttaagtattttacttgt 34456973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 41474724 - 41474800
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||||||||| |||| ||  ||||||||||||||||||| | |||||||| || | ||||| ||| |||||||||||    
T  41474724 tagttaactactgctgaagt-atttaagtattttacttgtgtcattgtgaaattatcaatatgagagaaacaattttc 41474800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 40614744 - 40614800
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagttttt 155  Q
    ||||||||||| ||||| | |||||||||||||||||||| |  || ||||||||||    
T  40614744 tagttaactactgctgggggcatttaagtattttacttgtgtctttatgaagttttt 40614800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 41474661 - 41474601
Alignment:
Q  116 agacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||| ||||||| |||| |||||||||| |||| ||| | | |||||||||||||    
T  41474661 agacatttaaatattttatttgtgttattgtgaaattttcaatgtcaaaaaaacaattttc 41474601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 27543683 - 27543801
Alignment:
Q  63 ttcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatatta 162  Q
    ||||| ||||||| |||| || |||||||||||   |||||||||||||| ||||| |||| | |||||||||||| ||| ||| ||||||||||| | |    
T  27543683 ttcagcggtagttaactgctgccggatcctcaacagtagttaactaccgcgggagatatttcaatattttacttgtgttaatgtaaagtttttaatgtca 27543782  T
Q  163 gaaaaacaattttctagca 181  Q
    ||||| ||||||| |||||    
T  27543783 gaaaagcaattttttagca 27543801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 47317777 - 47317864
Alignment:
Q  89 tcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||||||| | ||||| ||||||| ||| | |||||| ||||||||    
T  47317777 tcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattttc 47317864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 18792633 - 18792689
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagttttt 155  Q
    ||||||| ||| |||||||||||||||||||||||||||| |  || ||||||||||    
T  18792633 tagttaattactgctggagacatttaagtattttacttgtgtctttatgaagttttt 18792689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 27866928 - 27866850
Alignment:
Q  60 gaattcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgt 138  Q
    |||||||| ||||||| |||| || ||| || |||| | ||||||||||||||||  | ||||||| ||||||||||||    
T  27866928 gaattcagcggtagttaactgctgccgggtcttcaacggtagttaactaccgctgagggcatttaaatattttacttgt 27866850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 18792042 - 18791929
Alignment:
Q  63 ttcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatatta 162  Q
    ||||| ||||||| |||| |||||| || |||||| ||||||||||| | ||  |  ||||||||||||||||||| || ||  ||||| || ||| | |    
T  18792042 ttcagcggtagttaactgctgtcgggtcttcaatggtagttaactactgttgatggtatttaagtattttacttgtgtttttaggaagtattcaatgtca 18791943  T
Q  163 gaaaaacaattttc 176  Q
     |||||||||||||    
T  18791942 aaaaaacaattttc 18791929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 31594311 - 31594388
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttcta 178  Q
    |||||| |||| ||| |||||||| ||||||||||||| | | |  ||| |||| ||||| |||||||||||||||||    
T  31594311 gttaacaaccgttggggacatttatgtattttacttgtgtcaattggaacttttcaatatcagaaaaacaattttcta 31594388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 20708282 - 20708230
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagttt 153  Q
    |||||| |||||||| | ||||| |||||||||||||| | ||||||||||||    
T  20708282 gttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagttt 20708230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 20876326 - 20876274
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagttt 153  Q
    |||||| |||||||| | ||||| |||||||||||||| | ||||||||||||    
T  20876326 gttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagttt 20876274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 47944392 - 47944444
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagttt 153  Q
    |||||| |||| ||| || ||||||||||||||||||| | ||||||||||||    
T  47944392 gttaacaaccgttggggatatttaagtattttacttgtgtcattgtgaagttt 47944444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 47949822 - 47949874
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagttt 153  Q
    |||||| |||| ||| || ||||||||||||||||||| | ||||||||||||    
T  47949822 gttaacaaccgttggggatatttaagtattttacttgtgtcattgtgaagttt 47949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 43036438 - 43036552
Alignment:
Q  63 ttcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatatta 162  Q
    ||||| ||||||| |||| || ||| ||||||| | ||||||||||||||| | | |||||||||||||||||||| | |||||||||||||| || | |    
T  43036438 ttcagcggtagttaactgctgccgggtcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtgtcattgtgaagttttttatgtca 43036537  T
Q  163 gaaaaacaattttct 177  Q
     |||| |||||||||    
T  43036538 aaaaagcaattttct 43036552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 40729880 - 40729987
Alignment:
Q  69 ggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaa 168  Q
    ||||||| |||| || ||| |||| || | ||||||| ||||||||| | |||||||||||||||||||| | ||||||||||||| ||| | ||||||     
T  40729880 ggtagttaactgctgccggttcctgaacggtagttaaataccgctggtggcatttaagtattttacttgtgtcattgtgaagttttcaatgtcagaaaag 40729979  T
Q  169 caattttc 176  Q
    ||||||||    
T  40729980 caattttc 40729987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 47110098 - 47110057
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtat 140  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  47110098 tagttaactaccgctagagacatttaagtattttacttgtat 47110057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 2333829 - 2333905
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttct 177  Q
    |||||| |||| ||| | |||||||||||||||||||| | |||||||||||||| || | |||||| |||||||||    
T  2333829 gttaacaaccgttgggggcatttaagtattttacttgtgtcattgtgaagttttttatgtcagaaaagcaattttct 2333905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 32430561 - 32430492
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaa 168  Q
    ||||||||||||||||| ||||||||||||||| || ||| || ||  |||||||||||| ||| |||||    
T  32430561 tagttaactaccgctggggacatttaagtatttcacatgtgtttttaggaagtttttaatgttaaaaaaa 32430492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 50825966 - 50826015
Alignment:
Q  89 tcctcaatgatagttaactaccgctggagacatttaagtattttacttgt 138  Q
    ||||||||  ||||||||||||| | ||||||||||||||||||||||||    
T  50825966 tcctcaatagtagttaactaccggtagagacatttaagtattttacttgt 50826015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 43035850 - 43035766
Alignment:
Q  93 caatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttct 177  Q
    ||||| |||||||||||||| || |||||||| ||||||||||||| | | |||||| || | ||| | |||||| |||||||||    
T  43035850 caatggtagttaactaccgccggggacatttaggtattttacttgtgtcaatgtgaacttatcaatgtcagaaaagcaattttct 43035766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 22436113 - 22436075
Alignment:
Q  100 agttaactaccgctggagacatttaagtattttacttgt 138  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  22436113 agttaactgccgctggaggcatttaagtattttacttgt 22436075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 47110734 - 47110828
Alignment:
Q  84 tcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttcta 178  Q
    |||||| ||||| | ||||||||||||||| | |  |||| |||||||||||||| | | ||| || |||| || ||||||||| ||||||||||    
T  47110734 tcggattctcaacggtagttaactaccgctaggggtatttcagtattttacttgtgtcaatgtaaaattttcaagattagaaaagcaattttcta 47110828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 52658057 - 52658007
Alignment:
Q  126 gtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||||||||||| ||||||||||||| | ||| |||||| ||||||||||    
T  52658057 gtattttacttgtgttattgtgaagttatgaatgttagaagaacaattttc 52658007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 17045068 - 17045012
Alignment:
Q  119 catttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaatttt 175  Q
    |||||||||||||||||||| | |||||||||||||  || |  |||||||||||||    
T  17045068 catttaagtattttacttgtgtcattgtgaagttttctatgtgtgaaaaacaatttt 17045012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 6253587 - 6253664
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||||||| || |||||||||||||||||||||| | |||||||||||||  || |||||||| ||||||||    
T  6253587 tagttaactaccgcgggggacatttaagtattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttc 6253664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 33073752 - 33073700
Alignment:
Q  101 gttaactaccgctggagacatttaagtattttacttgtattattgtgaagttt 153  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||||||    
T  33073752 gttaacaaccgctggaggcatttaagtattttacttgtgttattgtgaagttt 33073700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 6253379 - 6253300
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttcta 178  Q
    ||||||||||||| ||| | ||||||| |||||||||||| | |||||||||||||  || |||||||| ||||||||||    
T  6253379 tagttaactaccgttgggggcatttaattattttacttgtgtcattgtgaagttttctatgttagaaaagcaattttcta 6253300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 20086230 - 20086269
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgt 138  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  20086230 tagttaactaccgctggaggcatttaagtattttatttgt 20086269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 234006 - 233929
Alignment:
Q  99 tagttaactaccgctggaga-catttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||||||||  ||| |||||||||||||||||||| | ||| |||||||||| |||| | |||| ||||||||    
T  234006 tagttaactaccgcta-agagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 233929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 710417 - 710340
Alignment:
Q  99 tagttaactaccgctggaga-catttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||||||||  ||| |||||||||||||||||||| | ||| |||||||||| |||| | |||| ||||||||    
T  710417 tagttaactaccgcta-agagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 710340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 747629 - 747552
Alignment:
Q  99 tagttaactaccgctggaga-catttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||||||||  ||| |||||||||||||||||||| | ||| |||||||||| |||| | |||| ||||||||    
T  747629 tagttaactaccgcta-agagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 747552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 871524 - 871447
Alignment:
Q  99 tagttaactaccgctggaga-catttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||||||||  ||| |||||||||||||||||||| | ||| |||||||||| |||| | |||| ||||||||    
T  871524 tagttaactaccgcta-agagcatttaagtattttacttgtgtcattctgaagttttttatatcacaaaagcaattttc 871447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 8037288 - 8037326
Alignment:
Q  100 agttaactaccgctggagacatttaagtattttacttgt 138  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  8037288 agttaactaccgctggggacatttatgtattttacttgt 8037326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 32472478 - 32472429
Alignment:
Q  89 tcctcaatgatagttaactaccgctggagacatttaagtattttacttgt 138  Q
    ||||||| | |||||||||||||| |||| ||||| ||||||||||||||    
T  32472478 tcctcaacggtagttaactaccgcgggaggcattttagtattttacttgt 32472429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 24803744 - 24803796
Alignment:
Q  126 gtattttacttgtattattgtgaagtttttaatattagaaaaacaattttcta 178  Q
    ||||||||||||| ||||||||||||| | ||| | |||||| ||||||||||    
T  24803744 gtattttacttgtgttattgtgaagttatgaatgtgagaaaagcaattttcta 24803796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 29977 - 30044
Alignment:
Q  89 tcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagttttta 156  Q
    ||||||| | ||||||||||||||| | | |||||||||||||||||||||| |||||||||||||||    
T  29977 tcctcaacggtagttaactaccgctaggggcatttaagtattttacttgtatcattgtgaagttttta 30044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 32319 - 32386
Alignment:
Q  89 tcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagttttta 156  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||||||| | |||||||||||||||    
T  32319 tcctcaacggtagttaactaccgctgggggcatttaagtattttacttgtgtcattgtgaagttttta 32386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 37770306 - 37770215
Alignment:
Q  64 tcaggggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagttttt 155  Q
    |||| ||||||| |||| | |||||||||||| ||||||||||||||| ||| | |||||||||||||||| ||| | |||| |||||||||    
T  37770306 tcagcggtagttaactgatatcggatcctcaacgatagttaactaccgttgggggcatttaagtattttacgtgtgtcattgcgaagttttt 37770215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 33216411 - 33216334
Alignment:
Q  99 tagttaactaccgctggaga-catttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||| ||| | | |||||||||||||    
T  33216411 tagttaactaccgctg-agagcatttaagtattttacttgtgtcattgtgaagttttcaatgtcaaaaaaacaattttc 33216334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 18982055 - 18982148
Alignment:
Q  85 cggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttcta 178  Q
    ||||||||||| | ||||||||||| || ||||| |||| | ||||||||||||||   |||||| | |||||| | |||||| ||||||||||    
T  18982055 cggatcctcaacggtagttaactactgcgggagatatttcaatattttacttgtatcggtgtgaattatttaatgtcagaaaagcaattttcta 18982148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 18981560 - 18981521
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgt 138  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  18981560 tagttaactatcgctggggacatttaagtattttacttgt 18981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 21761384 - 21761277
Alignment:
Q  69 ggtagtttactggtgtcggatcctcaatgatagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaa 168  Q
    ||||||| |||| |||||| ||||||| | ||||||||||||||| | | ||||||  |||||||||| | | | |||||||||||| || | | ||||     
T  21761384 ggtagttaactgatgtcgggtcctcaacggtagttaactaccgctaggggcatttagatattttacttttgtcaatgtgaagttttttatgtcaaaaaag 21761285  T
Q  169 caattttc 176  Q
    ||||||||    
T  21761284 caattttc 21761277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 21762046 - 21762124
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttct 177  Q
    ||||||||||||||| | |||||||| ||||||||||| | | | |||||| || | ||| | ||||||||||||||||    
T  21762046 tagttaactaccgctagggacatttaggtattttacttatgtcaatgtgaacttatgaatgtcagaaaaacaattttct 21762124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 33216985 - 33217038
Alignment:
Q  123 taagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||||||||| |||||| ||||||||||||| ||| | |||||| ||||||||    
T  33216985 taagtattttatttgtatcattgtgaagttttcaatgtcagaaaagcaattttc 33217038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 42805868 - 42805945
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    |||||||||||| | ||||  ||||||||||||||| | | || ||  ||||||||| || |||||||||||||||||    
T  42805868 tagttaactaccaccggaggtatttaagtattttacatatgtttttaagaagtttttgatgttagaaaaacaattttc 42805945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 33820174 - 33820097
Alignment:
Q  99 tagttaactaccgctggagacatttaagtattttacttgtattattgtgaagtttttaatattagaaaaacaattttc 176  Q
    ||||||||||||||||   | ||||||||||||||| |||  | ||  ||||||||| || |||||||||||||||||    
T  33820174 tagttaactaccgctgagtaaatttaagtattttacatgtgcttttaggaagtttttgatgttagaaaaacaattttc 33820097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 6979019 - 6979055
Alignment:
Q  102 ttaactaccgctggagacatttaagtattttacttgt 138  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  6979019 ttaactaccgctggagatattttagtattttacttgt 6979055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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