View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17595_low_6 (Length: 242)
Name: NF17595_low_6
Description: NF17595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17595_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 11803369 - 11803591
Alignment:
| Q |
2 |
aggagtgtccgtgcttcatagtttgctagatataacattatataattgtcataagaaatttaaattacattaaatatcttacattccctaaaattacata |
101 |
Q |
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| T |
11803369 |
aggagtgtccgtgcttcatagtttgctagatataacattatataattgtcataagaaatttaaattacattaaatatcttacattccctaaaattacata |
11803468 |
T |
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| Q |
102 |
tcaggcacaagcaataggggaggctgccagcaaattcatacaagaggacttagatatgaacaatgtatacaattacatgtttcatatactaaatgaatat |
201 |
Q |
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| T |
11803469 |
tcaggcacaagcaataggggaggctgccagcaaattcatacaagaggagttagatatgaacaatgtatacaattacatgtttcatatactaaatgaatat |
11803568 |
T |
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| Q |
202 |
gcaaagcttttgaaattcaaacc |
224 |
Q |
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| T |
11803569 |
gcaaagcttttgaaattcaaacc |
11803591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 103 - 224
Target Start/End: Original strand, 11811129 - 11811250
Alignment:
| Q |
103 |
caggcacaagcaataggggaggctgccagcaaattcatacaagaggacttagatatgaacaatgtatacaattacatgtttcatatactaaatgaatatg |
202 |
Q |
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|||||||| ||||||||||||| | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
11811129 |
caggcacagtcaataggggaggcaggtagcaaattcatacaagaggacttagacatgaaaaatgtatacaattacatgtttcatctactaaatgaatatg |
11811228 |
T |
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| Q |
203 |
caaagcttttgaaattcaaacc |
224 |
Q |
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||||||||||||| |||||||| |
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| T |
11811229 |
caaagcttttgaagttcaaacc |
11811250 |
T |
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