View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_10 (Length: 562)
Name: NF17596_high_10
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 372
Target Start/End: Original strand, 37129099 - 37129426
Alignment:
| Q |
51 |
catgaattaactcacatggatatattttaatcaatttacgtgaaagtgaacatttttttaaggaagaagagcaattttcatcannnnnnnnnaaggatac |
150 |
Q |
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| T |
37129099 |
catgaattaactcacgtggagatattttaattaattcacgtggaagtgaacatttttt-aaggaaaaagagtaattttcatcatttttttttaaggattc |
37129197 |
T |
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| Q |
151 |
atgaaaccgtctaaacacaaaatatattctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaattnnnnnnnnn-------tg |
243 |
Q |
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| T |
37129198 |
atgaaaccgtctgaacacaaaatatattcccatttgtgctatttacatcctttacttctggttacaccctccaacactaattcaaaaacaaaaaaaaatg |
37129297 |
T |
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| Q |
244 |
ccaaaaacgtcatctcatatttatatttcaaaaaccatattcctaatccaatctctctatctatatctctcaagatgtgaaaaattcttgataaatcgtt |
343 |
Q |
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| T |
37129298 |
ccaaaaacgtcatatcatatttatatttcaaaaaccatattcctaatcctatctctctatctatatctctcaagatgtgaaaaattcttgataaatcgtt |
37129397 |
T |
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| Q |
344 |
ggattaggaattttgcacaaggtatttca |
372 |
Q |
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| T |
37129398 |
ggattaggaattttgcacaaggtatttca |
37129426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 148 - 431
Target Start/End: Original strand, 37121080 - 37121363
Alignment:
| Q |
148 |
tacatgaaaccgtctaaacacaaaatatat--tctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaattnnnnnnnnntg-- |
243 |
Q |
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| T |
37121080 |
tacattaaaccgtctcaacacaaaatatatattctcatttgtgctatttatatcctttatttctggttacacccttcaatactaattacaaaaatttaaa |
37121179 |
T |
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| Q |
244 |
--ccaaaaacgtcatctcatatttatatttcaaaaaccatattcctaatccaatctctctatctatatctctcaagatgtgaaaaattcttgataaatcg |
341 |
Q |
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| T |
37121180 |
taccaaaaacgccatctcatatttattttttaaaaaccatttttgtaatccaatctctctacct------ctcaaggtgtgaaaaattcttgaaaaatcg |
37121273 |
T |
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| Q |
342 |
ttggattaggaattttgcacaaggtatttcattaacattccattccataggtatgtaaatcgttggctgatttttagtgtttaagtttta |
431 |
Q |
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| T |
37121274 |
ttgaattagaaattttgcataaggtatttcattaacattccatttcataggtaagtgaatggttgactgatttttagtgcttaagtttta |
37121363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 432 - 525
Target Start/End: Original strand, 37129513 - 37129608
Alignment:
| Q |
432 |
ccgtaattttttaactctagatcttatgtgaactcaattcacataagcttaagttg--ttaattcacgtagatattgtctataaaaattttgaatt |
525 |
Q |
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| T |
37129513 |
ccgtaattttttaactctagatcttatgtgaactcaattcacataagcttaagttgtctggattcacgtaaatattgtctataaaatttttgaatt |
37129608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 472
Target Start/End: Original strand, 37121429 - 37121463
Alignment:
| Q |
438 |
ttttttaactctagatcttatgtgaactcaattca |
472 |
Q |
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| T |
37121429 |
ttttttaactctagatcttacgtgaactcaattca |
37121463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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