View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_13 (Length: 519)
Name: NF17596_high_13
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 10 - 500
Target Start/End: Complemental strand, 9072450 - 9071960
Alignment:
| Q |
10 |
attattcttttagaaagttaatgataaatatttaaccttaacaaatgaccatgtttatatttcttcaagaaaaaatgaccatgtatattttaaatcttag |
109 |
Q |
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| T |
9072450 |
attattcttttagaaagttaatgataaatatttaaccttaacaaatgaccatgtttatatttcttcaagaaaaaatgaccatgtatattttaaatcttag |
9072351 |
T |
|
| Q |
110 |
ccccccaattaaattacacacgagaacaaactcttgcgtccttgtaaattttgcccggtctacaaaagtaccctttacttggattgcaatggctatcttg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072350 |
ccccccaattaaattacacacgagaacaaactcttgcgtccttgtaaattttgcccggtctacaaaagtaccctttacttggattgcaatggctatcttg |
9072251 |
T |
|
| Q |
210 |
tgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatgtactagagaaaagt |
309 |
Q |
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| T |
9072250 |
tgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatccgtccatgtactagagaaaagt |
9072151 |
T |
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| Q |
310 |
ccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttcaaatgccacatttctattcttaccccaat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072150 |
ccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtactttttgaaaactccttcaaatgccacatttctattcttaccccaat |
9072051 |
T |
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| Q |
410 |
gaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacg |
500 |
Q |
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| T |
9072050 |
gaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacg |
9071960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 322 - 500
Target Start/End: Complemental strand, 9059423 - 9059244
Alignment:
| Q |
322 |
tatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttc-aaatgccacatttctattcttaccccaatgaggtaaccct |
420 |
Q |
| |
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|||||||| |||||||||||||||| | | | || ||| |||||||||||||||||||| |||||||| ||| |||||||| ||||||||||| |||||| |
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| T |
9059423 |
tatttctcattaaccttcaaaaattgccccacatttttatacttcttgaaaactccttcgaaatgccaaattcctattcttcccccaatgaggcaaccct |
9059324 |
T |
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| Q |
421 |
ccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacg |
500 |
Q |
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| T |
9059323 |
ccatatttaaaaatccctatttgctcaatctcttcaaaaacgtcttcataaagcctaggagtcattggatctttgctacg |
9059244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 181 - 300
Target Start/End: Complemental strand, 9059541 - 9059422
Alignment:
| Q |
181 |
cctttacttggattgcaatggctatcttgtgaacaaatacacaaaccttct---aatgcacacccatttttcaatattgtcacaccttcttttattccaa |
277 |
Q |
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|||||||||||||||||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
9059541 |
cctttacttggattgcaatgactatcttgagagcaaatacacaaaccttcttctaatgcacacccatttttcaatattgtcacac---cttttaatccaa |
9059445 |
T |
|
| Q |
278 |
gcacttgatctgtccatgtacta |
300 |
Q |
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||| |||||| ||||| |||||| |
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| T |
9059444 |
gcatttgatccgtccaagtacta |
9059422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 203 - 500
Target Start/End: Complemental strand, 49016554 - 49016257
Alignment:
| Q |
203 |
tatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatgtactaga |
302 |
Q |
| |
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|||||||||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| | |||||| |||||| |
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| T |
49016554 |
tatcttgtgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtttgtccactcactaga |
49016455 |
T |
|
| Q |
303 |
gaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttcaaatgccacatttctattctta |
402 |
Q |
| |
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|||||| ||| |||||||||| | ||||||||||||||||| || | | || ||||| || |||| ||||| | | |||||||| || |
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| T |
49016454 |
gaaaagacctcgtgaatcatactcttctttaaccttcaaaaacttacctgctttcttatacttacggattgctcccacaaatcctaagtttctatttttc |
49016355 |
T |
|
| Q |
403 |
ccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacg |
500 |
Q |
| |
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|||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| ||||||||| |||||||||||| || ||||||||| ||||| |
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| T |
49016354 |
ccccaatgtggtaaccctccatatttgaacaacccaatttgttctatctcttcaattatgtcttcaaaaagcctaggagtcaatggatctttactacg |
49016257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 196 - 494
Target Start/End: Original strand, 490193 - 490491
Alignment:
| Q |
196 |
caatggctatcttgtgaacaaatacacaaaccttctaatgcacacccatttttcaatattgtcacaccttcttttattccaagcacttgatctgtccatg |
295 |
Q |
| |
|
||||| ||||||| ||| || |||||||| ||||| |||||||| |||| ||| ||||||||||| |||||||| | |||||||||||| |||||||| |
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| T |
490193 |
caatgactatcttttgagcatatacacaacccttccaatgcacatccatcttttaatattgtcaccccttctttaagtccaagcacttggtctgtccaat |
490292 |
T |
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| Q |
296 |
tactagagaaaagtccttgtgaatcatatttctctttaaccttcaaaaatttctcaatatctttgtacttcttgaaaactccttcaaatgccacatttct |
395 |
Q |
| |
|
|||||||||||||| | | |||||||||| ||||||||||||||| | | | || || || || | | || ||||| | | |||||| |
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| T |
490293 |
cactagagaaaagtctcttcgggtcatatttctttttaaccttcaaaaacctatttgccttattatatttttttattgcccccacaaatcctatatttct |
490392 |
T |
|
| Q |
396 |
attcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatcttt |
494 |
Q |
| |
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||| || |||||||| |||||||||||||| ||||| | ||| |||||||| |||||||||| || ||||||||||||||||||| || ||||||||| |
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| T |
490393 |
attttttccccaatggggtaaccctccatatttgaacaatcctatttgttctatctcttcaattatatcttcataaagcctaggagtcaatggatcttt |
490491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 361 - 496
Target Start/End: Complemental strand, 10813180 - 10813046
Alignment:
| Q |
361 |
tacttcttgaaaactccttcaaatgccacatttctattcttaccccaatgaggtaaccctccatacttgaaaattccaatttgttcaatctcttcaagaa |
460 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||| ||||||||||| || | ||||||||| || | | | ||||||||||||||||||| | || |
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| T |
10813180 |
tacttcttgaaaactccttcaaatgcaaggttcctatgattaccccaatgtggcagccctccatattttata-tcccaatttgttcaatctctttcaaaa |
10813082 |
T |
|
| Q |
461 |
tgtcttcataaagcctaggagccattggatctttgc |
496 |
Q |
| |
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||||||||||||| |||||||||||| ||||||||| |
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|
| T |
10813081 |
tgtcttcataaagtctaggagccattagatctttgc |
10813046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 10811580 - 10811643
Alignment:
| Q |
437 |
caatttgttcaatctcttcaagaatgtcttcataaagcctaggagccattggatctttgctacg |
500 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
10811580 |
caatttgttcaatctcttcaaaaatgtcttcataaagtctaggagccattagatctttgctacg |
10811643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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