View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17596_high_22 (Length: 395)
Name: NF17596_high_22
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 3331868 - 3332227
Alignment:
| Q |
15 |
aagatgttgccaggtaggactctctaatcctatctgctttttaataaatttttaccctatgatggaccattaaatagtagtcctagattagtataaatag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331868 |
aagatgttgccaggtaggactctctaatcctatctgctttttcattaatttttaccctatgatggaccattaaatagtagtcctagattagtataaatag |
3331967 |
T |
|
| Q |
115 |
gtatgtagtatttctctttgtccatcaagtaaaactttggataatatgacaagtttctacacattggctttgatagtgttgtttttacatgtgaatccta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331968 |
gtatgtagtatttctctttgtccatcaagtaaaactttggataatatgacaagtttctacacattggctttgatagtgttgtttttacatgtgaatccta |
3332067 |
T |
|
| Q |
215 |
ttgtttcttctaaagataggaaattaagctatggtgataatgatgatcttgtgactaacttacctggccagcctcctgtttatttccagcactatgctgg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3332068 |
ttgtttcttctaaagataggaaattaagctatggtgataatgatgatcttgtgactaacttacctggccagcctcctgtttatttccagcactatgctgg |
3332167 |
T |
|
| Q |
315 |
atatgtcacagttaatgaaaccaatggaagagcattgttttactggttttttgaggccat |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3332168 |
atatgtcacagttaatgaaaccaatggaagagcattgttttactggttttttgaggccat |
3332227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 3338446 - 3338577
Alignment:
| Q |
246 |
tggtgataatgatgatcttgtgactaacttacctggccagcctcctgtttatttccagcactatgctggatatgtcacagttaatgaaaccaatggaaga |
345 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| |||||||||| | ||||| | ||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
3338446 |
tggtgataagggtgatcttgtgactaacttaccaggccagcctcaagcagatttcaaacactatgctggttatgtcattgtcaatgaaaccaatggaaga |
3338545 |
T |
|
| Q |
346 |
gcattgttttactggttttttgaggccatgac |
377 |
Q |
| |
|
|| | ||||| ||||||||||||||| |||| |
|
|
| T |
3338546 |
tcactcttttattggttttttgaggccgtgac |
3338577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 3338349 - 3338421
Alignment:
| Q |
167 |
gtttctacacattggctttgatagtgttgtttttacatgtgaatcctattgtttcttctaaagataggaaatt |
239 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||||||| ||||| |||||| |
|
|
| T |
3338349 |
gtttctacacattggctttgatagtattgtttttatgtatgaatactattgtttcttctagagataagaaatt |
3338421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 371
Target Start/End: Complemental strand, 35795808 - 35795695
Alignment:
| Q |
258 |
tgatcttgtgactaacttacctggccagcctcctgtttatttccagcactatgctggatatgtcacagttaatgaaaccaatggaagagcattgttttac |
357 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||| || | ||||||||||||||||| |||||||| || ||| ||||||||||||||||| | ||||| |
|
|
| T |
35795808 |
tgatcttgtgactcacttgcctggtcagcctcaagtagacttccagcactatgctggttatgtcactgtcaataaaaccaatggaagagcactcttttat |
35795709 |
T |
|
| Q |
358 |
tggttttttgaggc |
371 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
35795708 |
tggttctatgaggc |
35795695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 28686676 - 28686720
Alignment:
| Q |
325 |
gttaatgaaaccaatggaagagcattgttttactggttttttgag |
369 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
28686676 |
gttaatgaaactcatggaagagcactgttttattggttttttgag |
28686720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University