View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_high_3 (Length: 707)

Name: NF17596_high_3
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_high_3
NF17596_high_3
[»] chr6 (21 HSPs)
chr6 (396-674)||(23130523-23130807)
chr6 (18-143)||(23130805-23130935)
chr6 (52-111)||(10031563-10031622)
chr6 (51-121)||(19369809-19369879)
chr6 (52-128)||(17168887-17168963)
chr6 (81-178)||(785395-785492)
chr6 (54-110)||(5579649-5579705)
chr6 (51-141)||(5970085-5970175)
chr6 (64-110)||(6751890-6751936)
chr6 (51-128)||(10760832-10760908)
chr6 (50-106)||(1334652-1334708)
chr6 (611-674)||(8365563-8365626)
chr6 (56-110)||(4859121-4859175)
chr6 (51-121)||(9024173-9024243)
chr6 (609-674)||(12696275-12696339)
chr6 (53-110)||(20809637-20809694)
chr6 (52-105)||(34868170-34868223)
chr6 (59-111)||(19343525-19343577)
chr6 (51-159)||(25038030-25038138)
chr6 (78-110)||(26402688-26402720)
chr6 (53-128)||(28862115-28862191)
[»] chr7 (19 HSPs)
chr7 (51-128)||(1885565-1885642)
chr7 (50-118)||(5937421-5937489)
chr7 (65-128)||(44172880-44172943)
chr7 (59-121)||(35238181-35238243)
chr7 (51-121)||(9050130-9050200)
chr7 (51-121)||(31808506-31808575)
chr7 (52-110)||(44317294-44317352)
chr7 (79-121)||(48964059-48964101)
chr7 (51-103)||(1934943-1934995)
chr7 (79-127)||(30013215-30013263)
chr7 (59-103)||(38134421-38134465)
chr7 (52-151)||(19206043-19206142)
chr7 (51-110)||(22801749-22801808)
chr7 (79-110)||(25956465-25956496)
chr7 (58-128)||(7438705-7438775)
chr7 (65-110)||(36013806-36013852)
chr7 (66-110)||(2144547-2144591)
chr7 (82-118)||(6518682-6518718)
chr7 (67-159)||(9408293-9408385)
[»] chr4 (25 HSPs)
chr4 (51-178)||(37496696-37496823)
chr4 (59-117)||(44362666-44362724)
chr4 (65-118)||(13307883-13307936)
chr4 (50-103)||(5654606-5654659)
chr4 (53-106)||(10634984-10635037)
chr4 (78-110)||(10164862-10164894)
chr4 (59-103)||(18513256-18513300)
chr4 (78-126)||(28084541-28084589)
chr4 (51-105)||(15969345-15969399)
chr4 (51-121)||(16303263-16303333)
chr4 (79-121)||(22799890-22799932)
chr4 (51-105)||(43093538-43093592)
chr4 (50-103)||(10546139-10546192)
chr4 (51-110)||(20633477-20633533)
chr4 (51-152)||(47263978-47264079)
chr4 (51-103)||(7012058-7012110)
chr4 (78-110)||(11797636-11797668)
chr4 (58-110)||(13117428-13117480)
chr4 (59-103)||(14465309-14465353)
chr4 (51-103)||(20743293-20743345)
chr4 (58-110)||(21945502-21945554)
chr4 (58-126)||(25950536-25950603)
chr4 (59-103)||(34589721-34589765)
chr4 (78-110)||(47492398-47492430)
chr4 (51-103)||(56049869-56049920)
[»] chr5 (28 HSPs)
chr5 (56-177)||(30080442-30080563)
chr5 (51-101)||(38866445-38866496)
chr5 (51-101)||(38749580-38749630)
chr5 (50-110)||(19167584-19167645)
chr5 (51-119)||(28296320-28296388)
chr5 (52-103)||(11596470-11596521)
chr5 (59-110)||(21319953-21320004)
chr5 (63-109)||(15294935-15294981)
chr5 (52-110)||(38784799-38784857)
chr5 (52-121)||(13287396-13287465)
chr5 (51-103)||(2039864-2039916)
chr5 (59-103)||(4344742-4344786)
chr5 (51-103)||(26205775-26205827)
chr5 (611-674)||(22013366-22013429)
chr5 (51-110)||(24906309-24906368)
chr5 (51-110)||(31084315-31084374)
chr5 (50-101)||(39342445-39342496)
chr5 (41-91)||(309140-309190)
chr5 (83-117)||(16207592-16207626)
chr5 (51-108)||(7621245-7621302)
chr5 (50-110)||(15302516-15302574)
chr5 (50-103)||(16881127-16881180)
chr5 (52-101)||(23287366-23287415)
chr5 (66-110)||(10010561-10010605)
chr5 (50-102)||(16880762-16880814)
chr5 (634-674)||(21191100-21191140)
chr5 (53-105)||(39424635-39424687)
chr5 (51-103)||(43208289-43208341)
[»] chr1 (16 HSPs)
chr1 (54-128)||(24462260-24462334)
chr1 (51-125)||(40176595-40176669)
chr1 (59-128)||(28170382-28170450)
chr1 (51-110)||(24176811-24176871)
chr1 (51-110)||(38078669-38078728)
chr1 (51-110)||(40686766-40686825)
chr1 (52-118)||(7988451-7988517)
chr1 (79-121)||(26390130-26390172)
chr1 (56-105)||(14332406-14332454)
chr1 (64-121)||(42386394-42386450)
chr1 (51-103)||(3921659-3921711)
chr1 (51-103)||(19637760-19637812)
chr1 (67-103)||(30847735-30847771)
chr1 (59-103)||(33202903-33202947)
chr1 (58-118)||(40142572-40142631)
chr1 (85-133)||(48547970-48548018)
[»] chr8 (13 HSPs)
chr8 (51-110)||(42874514-42874573)
chr8 (60-178)||(27733848-27733966)
chr8 (51-110)||(26915248-26915307)
chr8 (51-121)||(5307053-5307122)
chr8 (58-110)||(34073986-34074038)
chr8 (67-130)||(25566849-25566912)
chr8 (51-128)||(22651968-22652045)
chr8 (57-110)||(31548301-31548354)
chr8 (79-110)||(31119107-31119138)
chr8 (53-110)||(10002171-10002229)
chr8 (50-128)||(10497806-10497884)
chr8 (59-105)||(14480138-14480184)
chr8 (113-141)||(10767829-10767857)
[»] scaffold0024 (1 HSPs)
scaffold0024 (51-121)||(18105-18175)
[»] chr2 (19 HSPs)
chr2 (51-110)||(43586013-43586072)
chr2 (611-674)||(6940207-6940270)
chr2 (51-110)||(13501086-13501145)
chr2 (52-110)||(44984658-44984716)
chr2 (79-128)||(24067273-24067322)
chr2 (51-116)||(42665600-42665665)
chr2 (58-110)||(10535767-10535819)
chr2 (51-103)||(30298462-30298514)
chr2 (59-127)||(40681982-40682050)
chr2 (79-127)||(14450784-14450834)
chr2 (60-103)||(18570973-18571016)
chr2 (82-121)||(21371795-21371834)
chr2 (56-95)||(25317134-25317173)
chr2 (51-110)||(37558969-37559028)
chr2 (52-110)||(40909607-40909665)
chr2 (54-103)||(31026690-31026739)
chr2 (60-124)||(7803410-7803474)
chr2 (58-110)||(18512150-18512202)
chr2 (54-110)||(39323259-39323315)
[»] chr3 (13 HSPs)
chr3 (51-101)||(41319327-41319377)
chr3 (53-119)||(49179714-49179780)
chr3 (49-105)||(34409355-34409411)
chr3 (64-106)||(14338495-14338537)
chr3 (60-121)||(11093571-11093632)
chr3 (58-110)||(21861568-21861620)
chr3 (60-103)||(12704672-12704715)
chr3 (60-101)||(7948959-7949001)
chr3 (73-123)||(26656714-26656764)
chr3 (78-111)||(13005445-13005478)
chr3 (51-144)||(21478675-21478768)
chr3 (53-121)||(3164022-3164090)
chr3 (51-103)||(25074781-25074833)
[»] scaffold0136 (1 HSPs)
scaffold0136 (78-141)||(3826-3889)
[»] scaffold0314 (1 HSPs)
scaffold0314 (64-110)||(8953-8999)
[»] scaffold0022 (1 HSPs)
scaffold0022 (51-121)||(99885-99955)
[»] scaffold0003 (1 HSPs)
scaffold0003 (51-128)||(241586-241663)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 396 - 674
Target Start/End: Complemental strand, 23130807 - 23130523
Alignment:
Q  396 tatattgacattatctcacgtattacagcgacactaataactattttacaaccaataaccggaggatttggactcactctcctaatattataggatcaaa 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  23130807 tatattgacattatctcacgtattacagcgacactaataactattttacaaccaataaccggaggatttggactccctctcctaatattacaggatcaaa 23130708  T
Q  496 ctcttacaaatgataccggaaatttggactccgtctcttgatataataggaacaaactcttaacactaaagtgacacgtcttaggctatagtttgagatt 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23130707 ctcttacaaatgataccggaaatttggactccgtctcttgatataataggaacaaactcttaacactaaagtgacatgtcttaggctatagtttgagatt 23130608  T
Q  596 atttactttgtattaatgaaacacggat------acgggcatcagacacaacactgacactgacatgccgacatagctaataatt 674  Q
    ||||||||||||| ||||||||||||||      |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23130607 atttactttgtatcaatgaaacacggatacagacacggacatcagacacaacactgacactgacatgccgacatagctaataatt 23130523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 23130935 - 23130805
Alignment:
Q  18 cacagacaccgacaccggaacatgacaattaaagacacgtcgacaccgataatattttggaaaaatgacataatt-----caatgtaatcacaagtgttt 112  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||   ||||||||||||||     ||||||||||| ||||||||    
T  23130935 cacagacaccgacaccgaaacatgacaattaaagacacgtcgacgccggtaatattttaagaaaatgacataattcaattcaatgtaatcataagtgttt 23130836  T
Q  113 gtgtcgtgttggtgtccgatatgacacatat 143  Q
    ||||||||| | |||||||||| ||||||||    
T  23130835 gtgtcgtgtcgatgtccgatataacacatat 23130805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 10031563 - 10031622
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtt 111  Q
    |||||| ||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  10031563 acacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtt 10031622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 19369809 - 19369879
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||| ||||| ||||| ||||||  ||||||||||||||||||||||||||||||||  |||||||||    
T  19369809 gacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgt 19369879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 17168887 - 17168963
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    |||||||||||  ||||||| |||| |||||||||||||||||||||||  | | ||||||||||||| ||||||||    
T  17168887 acacgtcgacattgataataatttgaaaaaatgacataattcaatgtaactatatgtgtttgtgtcgtattggtgtc 17168963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 785492 - 785395
Alignment:
Q  81 aatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacaccaaaacacgtcttcaatcagaagtgtcc 178  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||  | ||||    | ||||||||||  ||||  ||||||||||||||||||    
T  785492 aatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtcc 785395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 5579649 - 5579705
Alignment:
Q  54 acgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||||||||||| ||||||  ||||||||||| ||||||||| ||||||||||    
T  5579649 acgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 5579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 5970175 - 5970085
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacat 141  Q
    ||||||||||||| | ||||| |||| |||||| |||||||||| |||||| |||| |||  ||||||||| |||||| || | |||||||    
T  5970175 gacacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgacacat 5970085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 6751936 - 6751890
Alignment:
Q  64 cgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 6751890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 10760908 - 10760832
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    ||||||||||||| ||||||| ||||  |||||||||| ||| |||||||||||| ||||   |||||||||||||||    
T  10760908 gacacgtcgacactgataataatttgagaaaatgacat-attgaatgtaatcacacgtgtcgatgtcgtgttggtgtc 10760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 1334652 - 1334708
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaa 106  Q
    |||||| | ||||| ||||| |||||| ||||| |||||||||||||||||||||||    
T  1334652 agacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaa 1334708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 674
Target Start/End: Complemental strand, 8365626 - 8365563
Alignment:
Q  611 atgaaacacggatacgggcatcagacacaacactgacactgacatgccgacatagctaataatt 674  Q
    ||||| ||||||||||| || ||||||| |||| |||||||||| ||||||| | |||||||||    
T  8365626 atgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatt 8365563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 4859175 - 4859121
Alignment:
Q  56 gtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||| |||||| ||||  ||||||||||||| ||||||||||||| ||||    
T  4859175 gtcgacaccaataataatttgagaaaatgacataatccaatgtaatcacacgtgt 4859121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 9024243 - 9024173
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||||||||||||  || ||| ||||  ||||||||||||||||||||||||| | ||||  |||||||||    
T  9024243 gacacgtcgacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgt 9024173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 674
Target Start/End: Original strand, 12696275 - 12696339
Alignment:
Q  609 taatgaaacacggatacgggcatcagacacaacactgacactgacatgccgacatagctaataatt 674  Q
    ||||||| ||||||||||| || | ||||| |||| |||||||||| ||||||| |||||||||||    
T  12696275 taatgaagcacggatacggaca-cggacacgacacggacactgacacgccgacacagctaataatt 12696339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 20809637 - 20809694
Alignment:
Q  53 cacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||||| |||||| |||| | |||||||  || ||||||||||||||    
T  20809637 cacgtcgacaccgataaaattttgaaaaattaacataatctaaggtaatcacaagtgt 20809694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 34868223 - 34868170
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcaca 105  Q
    |||||||||||||||||| ||||||  | |||  ||||||||||||||||||||    
T  34868223 acacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatcaca 34868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 19343577 - 19343525
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtt 111  Q
    |||||||||| || |||| |||| |||||| |||||||||||||||| |||||    
T  19343577 gacaccgatattaatttgaaaaagtgacatgattcaatgtaatcacatgtgtt 19343525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 25038138 - 25038030
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacac 150  Q
    ||||||| ||||||| ||||| ||||  ||||| |||||||| | |||||| |||| |||  || | |||||||||||||| | ||||| | || |||||    
T  25038138 gacacgttgacaccgttaataatttgagaaaattacataatttagtgtaattacaaatgtcggtattgtgttggtgtccgacacgacacgtgtccgacac 25038039  T
Q  151 caaaacacg 159  Q
    || ||||||    
T  25038038 cagaacacg 25038030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 26402720 - 26402688
Alignment:
Q  78 aaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||||| |||||||||||||||    
T  26402720 aaaaatgacataattcagtgtaatcacaagtgt 26402688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 28862115 - 28862191
Alignment:
Q  53 cacgtcgacaccgataatattttggaaaaatgacat-aattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    |||| ||||| |||||||| ||||  |||||||||| |||||| |||||||| | ||||  ||||||||||||||||    
T  28862115 cacgccgacatcgataataatttgataaaatgacattaattcagtgtaatcatatgtgtcggtgtcgtgttggtgtc 28862191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 1885565 - 1885642
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    ||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1885565 gacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtc 1885642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 5937489 - 5937421
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcg 118  Q
    ||||||||| |||| ||||| ||||||  |||||||||||||||||||||||||||||||| |||||||    
T  5937489 agacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcg 5937421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 44172943 - 44172880
Alignment:
Q  65 gataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    ||||||| ||||  ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgtc 44172880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 35238243 - 35238181
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||| ||||| |||||||||    
T  35238243 gacaccgataatattttgagaaaatgacataattcaatataatcacacgtgttagtgtcgtgt 35238181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 9050200 - 9050130
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||||||  ||||| |||||| |||||||||||| |||||| |||||||| |||| ||||||||||    
T  9050200 gacacgtcgacatagataaaattttgaaaaaatgacatagttcaatataatcacatgtgtctgtgtcgtgt 9050130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 31808575 - 31808506
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||| ||||||||||| ||||  ||||||||| || |||||||||||||| ||||| |||||||||    
T  31808575 gacacgtcg-caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgt 31808506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 44317352 - 44317294
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| ||||| ||||| |||||  |||||||||||||||||||||||||| ||||||    
T  44317352 acacgttgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagtgt 44317294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 48964101 - 48964059
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  48964101 aaaatgacataattcaatttaatcacaagtgttggtgtcgtgt 48964059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 1934943 - 1934995
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||| ||||||||||||||| |||| |||| |||||||||| ||||||||||    
T  1934943 gacacatcgacaccgataataatttgtaaaattgacataattgaatgtaatca 1934995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 30013215 - 30013263
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgt 127  Q
    |||||||| ||||||||| |||||||| ||||||||||| |||||||||    
T  30013215 aaaatgacgtaattcaatataatcacatgtgtttgtgtcatgttggtgt 30013263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 38134465 - 38134421
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 19206043 - 19206142
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacacc 151  Q
    ||||| |||||||| ||||| ||||  ||||| |||||||||| | |||| | | ||||  ||||| |||||||||| || |||||||||||| ||||||    
T  19206043 acacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtcttgttggtgtcagagatgacacatatctgacacc 19206142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 22801808 - 22801749
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||| |||||||| | ||||||  | |||||||||||||| |||||||||||||||    
T  22801808 gacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgt 22801749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 25956465 - 25956496
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||||||||||||||||||||    
T  25956465 aaaatgacataattcaatgtaatcacaagtgt 25956496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 7438705 - 7438775
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    |||||| | ||||| |||| |||||| ||||||||||||||||| ||||||||  ||||| ||| ||||||    
T  7438705 cgacacagttaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtc 7438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 36013852 - 36013806
Alignment:
Q  65 gataatattttg-gaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  36013852 gataataatttgagaaaaatgacataattcaatgtaatcacacgtgt 36013806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 2144591 - 2144547
Alignment:
Q  66 ataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||| ||||||  ||||||||||||||||||||||||||| ||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgt 2144547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 6518682 - 6518718
Alignment:
Q  82 atgacataattcaatgtaatcacaagtgtttgtgtcg 118  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  6518682 atgacataattcaatgtgatcacatgtgtttgtgtcg 6518718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 9408385 - 9408293
Alignment:
Q  67 taatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacaccaaaacacg 159  Q
    ||||| |||| |||||| |||||||| | |||||| ||||||||  ||||||| | |||||| || | || | ||||| ||||||||||||||    
T  9408385 taataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtatcggtgtcagacacgatatatatccgacaccaaaacacg 9408293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 51 - 178
Target Start/End: Original strand, 37496696 - 37496823
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacac 150  Q
    ||||||| |||||||||||| |||||  ||||||||||||||||||||||||||||||||  |||| |||| | || | || | ||||||| ||||||||    
T  37496696 gacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcggacac 37496795  T
Q  151 caaaacacgtcttcaatcagaagtgtcc 178  Q
    |   ||||| ||||||||| ||||||||    
T  37496796 cgggacacgccttcaatcataagtgtcc 37496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 44362666 - 44362724
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtc 117  Q
    ||||||||||| ||||||  |||||||||||||| |||||||||||||||||| |||||    
T  44362666 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 44362724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 13307883 - 13307936
Alignment:
Q  65 gataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcg 118  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcg 13307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 5654659 - 5654606
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||| |||||||| ||||||| ||||  |||||||||||||||||||||||||    
T  5654659 agacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 10634984 - 10635037
Alignment:
Q  53 cacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaa 106  Q
    |||||||| || ||||| |||||| ||||||||||||||||||||| |||||||    
T  10634984 cacgtcgatactgataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 10164894 - 10164862
Alignment:
Q  78 aaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||||||||||||||||||||||||||||    
T  10164894 aaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 18513300 - 18513256
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatca 18513256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 28084541 - 28084589
Alignment:
Q  78 aaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtg 126  Q
    |||||| ||||||||||||||||| |||||||| |||||||||| ||||    
T  28084541 aaaaatcacataattcaatgtaattacaagtgtctgtgtcgtgtcggtg 28084589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 15969345 - 15969399
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcaca 105  Q
    ||||||||||||| ||||||| |||  |||||| |||||||| ||||||||||||    
T  15969345 gacacgtcgacactgataataattttaaaaaataacataatttaatgtaatcaca 15969399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 16303333 - 16303263
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||||| |||||  |||||||||||| |||||||| |||||| | |||||| ||||||||  |||||||||    
T  16303333 gacacgccgacaaagataatattttgaaaaaatgatataatttagtgtaattacaagtgtcggtgtcgtgt 16303263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 22799932 - 22799890
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||||||||||||||||||||| ||||  |||||||||    
T  22799932 aaaatgacataattcaatgtaatcacacgtgtcagtgtcgtgt 22799890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 43093592 - 43093538
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcaca 105  Q
    |||||||| ||||| |||||| |||| ||||||| ||||||| ||||||||||||    
T  43093592 gacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcaca 43093538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 10546139 - 10546192
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||| |||||||  ||||||| ||||  |||||||||||||||||||||||||    
T  10546139 agacatgtcgacaatgataataatttgagaaaatgacataattcaatgtaatca 10546192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 20633477 - 20633533
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||| ||||| |||| |||||   |||||||||||||||| ||||||||    
T  20633477 gacacgtcgacaccgctaataatttgaaaaaa---cataattcaatgtaattacaagtgt 20633533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 47263978 - 47264079
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacac 150  Q
    ||||||||||||  | ||||| |||| |||||| |||||||||  |||||| |||| |||   |||| |||||||||| |||| ||||||| || |||||    
T  47263978 gacacgtcgacatagctaataatttgtaaaaatcacataattctgtgtaattacaaatgtcgatgtcatgttggtgtcagatacgacacatgtctgacac 47264077  T
Q  151 ca 152  Q
    ||    
T  47264078 ca 47264079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 7012058 - 7012110
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    |||||| |||||||||||||| ||||  |||||||||||||||| ||| ||||    
T  7012058 gacacgccgacaccgataataatttgagaaaatgacataattcagtgtgatca 7012110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 11797668 - 11797636
Alignment:
Q  78 aaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||| |||||||||||||||||    
T  11797668 aaaaatgacataatttaatgtaatcacaagtgt 11797636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 13117428 - 13117480
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||| |||| |||| |  ||||||||| ||||||||||||||||||||||    
T  13117428 cgacaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgt 13117480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 14465353 - 14465309
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||||| ||||  |||||||||||||||||| ||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatca 14465309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 20743345 - 20743293
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    |||||| |||||| ||||||| ||||  |||||||||||||||| ||||||||    
T  20743345 gacacgccgacacggataataatttgagaaaatgacataattcagtgtaatca 20743293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 21945502 - 21945554
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| | ||||| |||| ||||||||||||||||| |||||| ||||||||    
T  21945502 cgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgt 21945554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 25950603 - 25950536
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtg 126  Q
    |||||||||||||| |||| ||||||||||||||||  |||| ||| | ||||| ||||||||| ||||    
T  25950603 cgacaccgataataatttg-aaaaatgacataattctgtgtattcataggtgttggtgtcgtgtcggtg 25950536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 34589765 - 34589721
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||| | ||||  |||||||||||||||||||||||||    
T  34589765 gacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 78 - 110
Target Start/End: Original strand, 47492398 - 47492430
Alignment:
Q  78 aaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||| |||||||||||||||||    
T  47492398 aaaaatgacataatttaatgtaatcacaagtgt 47492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 56049869 - 56049920
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||| ||||||||||||||| |||| | |||||||||| |||||||||||||    
T  56049869 gacacatcgacaccgataataatttg-agaaatgacatagttcaatgtaatca 56049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 56 - 177
Target Start/End: Complemental strand, 30080563 - 30080442
Alignment:
Q  56 gtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacaccaaaa 155  Q
    |||||||| ||||| ||||||  |||||||||||||||||||||||||||||| |  |||| ||||| ||||| || ||||||||| |||||||||   |    
T  30080563 gtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgtggtgttagtgtcggacatgacacatgtcggacaccggga 30080464  T
Q  156 cacgtcttcaatcagaagtgtc 177  Q
    |||  ||||||| |||||||||    
T  30080463 cactccttcaattagaagtgtc 30080442  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 38866445 - 38866496
Alignment:
Q  51 gacacgtcgacaccgataatattttg-gaaaaatgacataattcaatgtaat 101  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  38866445 gacacgtcgacaccgataatattttgaaaaaaatgacataattcaatgtaat 38866496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 38749630 - 38749580
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaat 101  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  38749630 gacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaat 38749580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 19167645 - 19167584
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaa-tgacataattcaatgtaatcacaagtgt 110  Q
    |||||||| ||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||    
T  19167645 agacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgt 19167584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 28296320 - 28296388
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgt 119  Q
    |||| |||||||||||||||| ||||  ||||||||||||||||||||| ||| | ||||| |||||||    
T  28296320 gacaagtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcgt 28296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 11596521 - 11596470
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||| |||||||||| ||||  |||||||||||||||||||||||||    
T  11596521 acacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 21320004 - 21319953
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||| ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  21320004 gacacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgt 21319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 15294935 - 15294981
Alignment:
Q  63 ccgataatattttggaaaaatgacataattcaatgtaatcacaagtg 109  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||    
T  15294935 ccgatgatattttgaaaaaatgacataattcaaggtaatcacaagtg 15294981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 38784799 - 38784857
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||| ||| ||||||||| ||| || |||||||| ||||||||||||||||||||||||    
T  38784799 acacatcggcaccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgt 38784857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 13287465 - 13287396
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||||||||||| ||||||| |||| |||||| |||||||||| |||||  ||||||||  |||||||||    
T  13287465 acacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcgtgt 13287396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 2039916 - 2039864
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||||||| ||||| ||||  |||||||||| ||||||||||||||    
T  2039916 gacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 4344742 - 4344786
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||    
T  4344742 gacaccgataataatttgaaaaaatgacataattcagtgtaatca 4344786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 26205827 - 26205775
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    |||||||||| |||||||| ||||||  |||||||||||||||| ||||||||    
T  26205827 gacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 674
Target Start/End: Original strand, 22013366 - 22013429
Alignment:
Q  611 atgaaacacggatacgggcatcagacacaacactgacactgacatgccgacatagctaataatt 674  Q
    ||||| ||||||||||| || | ||||| |||| |||||||||| ||||||| |||||||||||    
T  22013366 atgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatt 22013429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 24906368 - 24906309
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| | |||| ||||||| |||| ||||||||||||||||| |||||| ||||||||    
T  24906368 gacacgccaacacagataataatttgaaaaaatgacataattcagtgtaattacaagtgt 24906309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 31084315 - 31084374
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| |||||| | ||||| |||| |||||| ||||||||||||||||| ||||||||    
T  31084315 gacacgccgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgt 31084374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 39342445 - 39342496
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaat 101  Q
    ||||||||| || ||||||||| |||| |||| |||||||||||||||||||    
T  39342445 agacacgtcaactccgataataatttgaaaaattgacataattcaatgtaat 39342496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 309140 - 309190
Alignment:
Q  41 gacaattaaagacacgtcgacaccgataatattttggaaaaatgacataat 91  Q
    |||||| | |||||||||||||||||||| ||||||  |||||||||||||    
T  309140 gacaatgacagacacgtcgacaccgataaaattttgagaaaatgacataat 309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 16207626 - 16207592
Alignment:
Q  83 tgacataattcaatgtaatcacaagtgtttgtgtc 117  Q
    ||||||||||||||||||||||||||||| |||||    
T  16207626 tgacataattcaatgtaatcacaagtgttggtgtc 16207592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 7621302 - 7621245
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagt 108  Q
    ||||||||||||| ||||| ||||   |||| |||||||||| |||||||||||||||    
T  7621302 gacacgtcgacacagataaaatttaaaaaaattgacataatttaatgtaatcacaagt 7621245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 15302516 - 15302574
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| |||||| |||||| |||||| ||||||||||  |||||| ||||||||||||||    
T  15302516 agacacatcgacaacgataaaattttgaaaaaatgaca--attcaaggtaatcacaagtgt 15302574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 16881127 - 16881180
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||| | ||| |||||| |||| ||||||||||||||| ||||||||||    
T  16881127 agacacgtcaatacccataataatttgaaaaaatgacataatttaatgtaatca 16881180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 23287415 - 23287366
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaat 101  Q
    ||||||||||||| |||||| ||| | |||||||||||||||||| ||||    
T  23287415 acacgtcgacaccaataataatttaggaaaatgacataattcaatataat 23287366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 10010561 - 10010605
Alignment:
Q  66 ataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||| |||||| ||||||||||||||||| |||||||||| ||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgt 10010605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 16880762 - 16880814
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatc 102  Q
    ||||||||||| ||| |||||| |||  |||||||||||| ||||||||||||    
T  16880762 agacacgtcgatacccataataatttaaaaaaatgacatagttcaatgtaatc 16880814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 634 - 674
Target Start/End: Complemental strand, 21191140 - 21191100
Alignment:
Q  634 gacacaacactgacactgacatgccgacatagctaataatt 674  Q
    ||||| |||| |||||||||||||||||| |||||||||||    
T  21191140 gacacgacacggacactgacatgccgacacagctaataatt 21191100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 39424635 - 39424687
Alignment:
Q  53 cacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcaca 105  Q
    |||||||||||| |||||| ||||  |||||||||| |||||||||| |||||    
T  39424635 cacgtcgacaccaataataatttgagaaaatgacatgattcaatgtattcaca 39424687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 43208341 - 43208289
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||| || ||||||||| || ||||  |||||||||||||||||||||||||    
T  43208341 gacacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaatca 43208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 24462334 - 24462260
Alignment:
Q  54 acgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    |||||||||| ||| | |||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  24462334 acgtcgacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagtttcagtgtcgtgttggtgtc 24462260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 40176595 - 40176669
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggt 125  Q
    |||||||| |||||||||| ||||||  |||||||| | |||||||||||||||| ||||  |||||||||||||    
T  40176595 gacacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtcagtgtcgtgttggt 40176669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 28170382 - 28170450
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    |||||| |||| |||||| |||||||||||||||||||||||| ||||||||  ||||| ||||||||||    
T  28170382 gacaccaataaaattttg-aaaaatgacataattcaatgtaataacaagtgtcagtgtcatgttggtgtc 28170450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 24176811 - 24176871
Alignment:
Q  51 gacacgtcgacaccgataatattttg-gaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||| |||||||||| |||||| |||||||||||| ||| |||||||||||||||||    
T  24176811 gacacgtcaacaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgt 24176871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 38078728 - 38078669
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||| | ||||| |||| |||||| ||||||||||||||||| ||||||||    
T  38078728 gacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgt 38078669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 40686825 - 40686766
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||||||| |||||| ||||||  ||||||| ||||||||||||||||| ||||||    
T  40686825 gacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgt 40686766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 7988517 - 7988451
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcg 118  Q
    |||||||||||| ||||||| |||   ||| ||||||||||||||||||||| ||||||| ||||||    
T  7988517 acacgtcgacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcg 7988451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 26390172 - 26390130
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||||||||||||| |||||||||||||||||  |||||||||    
T  26390172 aaaatgacataattgaatgtaatcacaagtgtcagtgtcgtgt 26390130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 14332406 - 14332454
Alignment:
Q  56 gtcgacaccgataatattttggaaaaatgacataattcaatgtaatcaca 105  Q
    |||||||||||||| ||||  ||||| |||||||||||||||||||||||    
T  14332406 gtcgacaccgataaaatttgagaaaa-tgacataattcaatgtaatcaca 14332454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 42386450 - 42386394
Alignment:
Q  64 cgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||||||| |||| ||||||| |||||||||||||||||||||| ||  |||||||||    
T  42386450 cgataataatttgaaaaaatg-cataattcaatgtaatcacaagggtcagtgtcgtgt 42386394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 3921659 - 3921711
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    |||||||| ||| | |||||| ||||  |||||||||||||||||||||||||    
T  3921659 gacacgtcaacatcaataataatttgagaaaatgacataattcaatgtaatca 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 19637760 - 19637812
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||| ||||||||||||||| |||   |||||||||| ||||||||||||||    
T  19637760 gacacatcgacaccgataataatttaagaaaatgacattattcaatgtaatca 19637812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 30847771 - 30847735
Alignment:
Q  67 taatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatca 30847735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 33202903 - 33202947
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||||| |||  ||||||||||||| ||||||||||||    
T  33202903 gacaccgataataattttaaaaaatgacataaatcaatgtaatca 33202947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 40142631 - 40142572
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcg 118  Q
    ||||||| |||||| ||||||||| ||| ||||| ||||||||||||| ||||| ||||||    
T  40142631 cgacaccaataataatttggaaaa-tgatataatccaatgtaatcacatgtgttggtgtcg 40142572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 48548018 - 48547970
Alignment:
Q  85 acataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgata 133  Q
    ||||||||||||||||| |||||| || ||||||||| |||||| ||||    
T  48548018 acataattcaatgtaattacaagtattggtgtcgtgtcggtgtcggata 48547970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 42874514 - 42874573
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||    
T  42874514 gacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgt 42874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 27733848 - 27733966
Alignment:
Q  60 acaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatcggacaccaaaacacg 159  Q
    |||||||||| ||||||  ||||||| ||||||||||||||||||||||||| ||||| ||| ||   |||| |  | || | |||||||||  ||||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgtcatgtcggacaccgacacaatacttgtcggacacccgaacacg 27733947  T
Q  160 tcttcaatcagaagtgtcc 178  Q
     ||||||||||||||||||    
T  27733948 ccttcaatcagaagtgtcc 27733966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 26915307 - 26915248
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||| ||||| ||||||  |||||||||||||| |||||||||||||||||    
T  26915307 gacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 26915248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 5307053 - 5307122
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||||||| ||||||| |||| |||||||||||||||||||| ||||| ||||||  |||||||||    
T  5307053 gacacgtcgacactgataataatttg-aaaaatgacataattcaatgaaatcataagtgtcggtgtcgtgt 5307122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 34074038 - 34073986
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||| ||||||    
T  34074038 cgacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgt 34073986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 25566849 - 25566912
Alignment:
Q  67 taatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccg 130  Q
    ||||| |||| |||||| |||||||||| |||||| ||||||||  ||||||||||||||||||    
T  25566849 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgttggtgtccg 25566912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 22651968 - 22652045
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    |||||| |||||| | ||||| |||| |||||| |||||||||||| |||| ||||||||  ||||||||| ||||||    
T  22651968 gacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtc 22652045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 31548354 - 31548301
Alignment:
Q  57 tcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||  ||||  ||||||||||||||||||||||||||| ||||    
T  31548354 tcgacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgt 31548301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 31119107 - 31119138
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||||||||||||||||||||||    
T  31119107 aaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 10002229 - 10002171
Alignment:
Q  53 cacgtcgacaccgataatattttggaaaaa-tgacataattcaatgtaatcacaagtgt 110  Q
    ||||| ||||||||||||| |||| ||||| |||||||||| |||||||||||| ||||    
T  10002229 cacgttgacaccgataataatttgaaaaaaatgacataatttaatgtaatcacatgtgt 10002171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 10497884 - 10497806
Alignment:
Q  50 agacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    ||||||| |||||| ||||| ||||||  ||||| ||||||||  ||||||||||||||||  || |||||| ||||||    
T  10497884 agacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtcagtatcgtgtcggtgtc 10497806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 14480138 - 14480184
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatcaca 105  Q
    ||||||||||||| ||||||||||||||| |||| || |||||||||    
T  14480138 gacaccgataataatttggaaaaatgacaaaattgaaagtaatcaca 14480184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 10767857 - 10767829
Alignment:
Q  113 gtgtcgtgttggtgtccgatatgacacat 141  Q
    |||||||||||||||||||||||||||||    
T  10767857 gtgtcgtgttggtgtccgatatgacacat 10767829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 18175 - 18105
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||||||||||||| ||||||  ||||| |||||||||||||||||| |||||||| |||| ||||    
T  18175 gacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggtgttgtgt 18105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 43586072 - 43586013
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||| |||| ||||| ||||||  ||||||||||||||||||||||||||||||||    
T  43586072 gacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 43586013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 674
Target Start/End: Original strand, 6940207 - 6940270
Alignment:
Q  611 atgaaacacggatacgggcatcagacacaacactgacactgacatgccgacatagctaataatt 674  Q
    ||||||||||||||||| ||||| | || |||| |||||||||| ||||||| |||||||||||    
T  6940207 atgaaacacggatacggacatcaaatacgacacggacactgacacgccgacacagctaataatt 6940270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 13501145 - 13501086
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||| ||||| ||||||| |||||   ||||||||||||||||||||||||||||||||    
T  13501145 gacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 44984716 - 44984658
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||| || | |||||| |||||||| |||||||||||| |||||||||||    
T  44984716 acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgt 44984658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 24067273 - 24067322
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    ||||||||||||||||||||||||||||||||| || || ||| ||||||    
T  24067273 aaaatgacataattcaatgtaatcacaagtgttggtttcatgtcggtgtc 24067322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 42665600 - 42665665
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgt 116  Q
    |||||||||| | |||||| |||||| ||| ||||||| |||||||||||||||| ||||| ||||    
T  42665600 gacacgtcgatatcgataaaattttgaaaagatgacatgattcaatgtaatcacatgtgttggtgt 42665665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 10535819 - 10535767
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||||||||| ||||  |||||||||||||||| |||||||| ||||||    
T  10535819 cgacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 30298514 - 30298462
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||||||||||||||||| |||   |||||||||||||||| ||||||||    
T  30298514 gacacgtcgacaccgataataatttaataaaatgacataattcagtgtaatca 30298462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 40681982 - 40682050
Alignment:
Q  59 gacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgt 127  Q
    ||||||||||||| ||||  |||||||||||||||||||||||  || ||||   ||||||||||||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaattgcacgtgtcaatgtcgtgttggtgt 40682050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 14450834 - 14450784
Alignment:
Q  79 aaaatgacataattcaatgtaatcacaagtgt--ttgtgtcgtgttggtgt 127  Q
    ||||| ||||||||||||||||||||||||||   ||||||||||||||||    
T  14450834 aaaatcacataattcaatgtaatcacaagtgtcagtgtgtcgtgttggtgt 14450784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 18570973 - 18571016
Alignment:
Q  60 acaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    |||||||||||| ||||  |||||||||||||||||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatca 18571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 21371795 - 21371834
Alignment:
Q  82 atgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  21371795 atgacataattaaatgtaatcacatgtgtttgtgtcgtgt 21371834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 25317134 - 25317173
Alignment:
Q  56 gtcgacaccgataatattttggaaaaatgacataattcaa 95  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  25317134 gtcgacaccgataataatttgaaaaaatgacataattcaa 25317173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 37558969 - 37559028
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| |||||| | ||||| |||| |||||| ||||||||||||||||| ||||||||    
T  37558969 gacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagtgt 37559028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 40909607 - 40909665
Alignment:
Q  52 acacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    ||||||||||||| || | |||||| |||||||| |||||||||||| || ||||||||    
T  40909607 acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgattacaagtgt 40909665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 31026690 - 31026739
Alignment:
Q  54 acgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    ||||||| |||||||||| |||   |||||||||||||||||||||||||    
T  31026690 acgtcgagaccgataataatttaagaaaatgacataattcaatgtaatca 31026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 7803474 - 7803410
Alignment:
Q  60 acaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttgg 124  Q
    |||||||||||| |||| ||| ||||||||||||||| |||||| |   ||| ||||||||||||    
T  7803474 acaccgataatagtttgaaaagatgacataattcaatataatcatatacgttggtgtcgtgttgg 7803410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 18512202 - 18512150
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||||||| ||||||  ||||| | ||||||||||||||||||| ||||    
T  18512202 cgacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgt 18512150  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 39323259 - 39323315
Alignment:
Q  54 acgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||||||||| ||||| ||||  ||||| |||||||||| |||||| ||||||||    
T  39323259 acgtcgacaccgctaataatttgacaaaattacataattcagtgtaattacaagtgt 39323315  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 41319377 - 41319327
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaat 101  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  41319377 gacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 49179780 - 49179714
Alignment:
Q  53 cacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgt 119  Q
    ||||||||||||||||| ||||||  ||| ||||||||||| ||||||||||||||||  |||||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgtcgt 49179714  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 34409411 - 34409355
Alignment:
Q  49 aagacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcaca 105  Q
    |||||||||| |||||||||||| || |  |||||||||||||||||||||||||||    
T  34409411 aagacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcaca 34409355  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 14338537 - 14338495
Alignment:
Q  64 cgataatattttggaaaaatgacataattcaatgtaatcacaa 106  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaa 14338495  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 11093571 - 11093632
Alignment:
Q  60 acaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||| ||||||| |||| |||||||||||||||||| ||||||| | ||||| |||||||||    
T  11093571 acactgataataatttgaaaaaatgacataattcaaagtaatcagatgtgttggtgtcgtgt 11093632  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 21861568 - 21861620
Alignment:
Q  58 cgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| ||||| | |||||||||||||||||||||| |||||||| ||||||    
T  21861568 cgacacagataacaatttggaaaaatgacataattcagtgtaatcataagtgt 21861620  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 12704715 - 12704672
Alignment:
Q  60 acaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    |||| ||||||| |||| ||||||||||||||||||||||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatca 12704672  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 7948959 - 7949001
Alignment:
Q  60 acaccgataatattttg-gaaaaatgacataattcaatgtaat 101  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  7948959 acaccgataatagtttgagaaaaatgacataattcaatgtaat 7949001  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 26656764 - 26656714
Alignment:
Q  73 tttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttg 123  Q
    ||||||||||| | |||||||||||||| |||| |||||||||| ||||||    
T  26656764 tttggaaaaataaaataattcaatgtaaccacatgtgtttgtgttgtgttg 26656714  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 13005445 - 13005478
Alignment:
Q  78 aaaaatgacataattcaatgtaatcacaagtgtt 111  Q
    ||||||||||||||||||| ||||||||||||||    
T  13005445 aaaaatgacataattcaatataatcacaagtgtt 13005478  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 21478675 - 21478768
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacatatc 144  Q
    |||| ||||||||| |||||| |||   || ||||||||| |||||||||||| | ||||| |||| || |||||||| || |||| |||||||    
T  21478675 gacatgtcgacaccaataataatttcacaagatgacataaatcaatgtaatcatatgtgttggtgttgttttggtgtcagacatgaaacatatc 21478768  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 3164090 - 3164022
Alignment:
Q  53 cacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    ||||||||||| | ||||| |||| |||||| |||||||||| |||||  |||||||||  ||||||||    
T  3164090 cacgtcgacacagctaataatttgaaaaaatcacataattcagtgtaagaacaagtgttgatgtcgtgt 3164022  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 25074781 - 25074833
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatca 103  Q
    |||||| |||||||||||||| ||||  |||||||||||||| | ||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 3889 - 3826
Alignment:
Q  78 aaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtccgatatgacacat 141  Q
    |||||| |||||||||| |||||| ||||||||  |||||||||||||||| || | |||||||    
T  3889 aaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacat 3826  T

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Target: scaffold0314 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 8953 - 8999
Alignment:
Q  64 cgataatattttggaaaaatgacataattcaatgtaatcacaagtgt 110  Q
    |||||| ||||||  ||||||||||||||||| ||||||||||||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtgt 8999  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 99885 - 99955
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgt 121  Q
    |||| |||||||||||||||| |||   ||||| ||||||||||||||||| | | ||||| |||||||||    
T  99885 gacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgt 99955  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 241586 - 241663
Alignment:
Q  51 gacacgtcgacaccgataatattttggaaaaatgacataattcaatgtaatcacaagtgtttgtgtcgtgttggtgtc 128  Q
    |||||| |||||| | ||||| ||||||||||| |||||||| | |||||| |  |||||  ||||||||||||||||    
T  241586 gacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtc 241663  T

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