View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_30 (Length: 340)
Name: NF17596_high_30
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 51350510 - 51350837
Alignment:
| Q |
16 |
ctccaattcttgaccgtgacaaccagcaccttcaagaacaattacaaaataataagtatatga----------------------ttgtcaaaatactaa |
93 |
Q |
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| T |
51350510 |
ctccaattcttgactgtgacaaccagcaccttcaagaacaattacaaaataataagtatatgaagcactgacagagatacggacattgtcacaatactaa |
51350609 |
T |
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| Q |
94 |
aactctcacacgttcgaaaacgataattatttgagaaaattgaatgtaagtatgtgtcatgtcggtgttcaacacacctgacacacattcaacttgaata |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51350610 |
aactctcacacgttcgaaaacgataattatttgagaaaattgaatgtaagtatgtgtcatgtcggtgttcaacacatctgacacacattcaacttgaata |
51350709 |
T |
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| Q |
194 |
gctatatataaaacatatggaggcgaatgaagaaacggtccctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350710 |
gctatatataaaacatatggaggcgaatgaagaaacggtccctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttc |
51350809 |
T |
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| Q |
294 |
cagaaacaatgcaaattagtgcagcaga |
321 |
Q |
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| T |
51350810 |
cagaaacaatgcaaattagtgcagcaga |
51350837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 317
Target Start/End: Original strand, 51360104 - 51360187
Alignment:
| Q |
234 |
cctgtaaaatacccaacaatggactccctcctggattcggggtacaatagaatctctttccagaaacaatgcaaattagtgcag |
317 |
Q |
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|||||||||||| ||||||||||||| | || ||| | | ||| ||||||||||||||||| |||||||||||| ||||||| |
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| T |
51360104 |
cctgtaaaatactcaacaatggactctccccaggaattcgtttacgatagaatctctttccagcaacaatgcaaataagtgcag |
51360187 |
T |
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