View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_31 (Length: 333)
Name: NF17596_high_31
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 21579762 - 21580063
Alignment:
| Q |
18 |
ccaacaagtgggacatatgcagtattctcaatcttaggtaacttaagaagaacaatagtttcaatacatttctctatcaacaaatccttagcaaaatcaa |
117 |
Q |
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| T |
21579762 |
ccaacaagtgggacatatgcagtattctcaatcttaggtaacttaagaagaacaatagtttcaatacatttctctatcaacaaatccttagcaaaatcaa |
21579861 |
T |
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| Q |
118 |
gacccttgttagatataacaccagagatgaaaccatcttcaaagggttgaacatagccacttgttggaattaataaaaggtataatagaaagaagagatt |
217 |
Q |
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| T |
21579862 |
gacccttgttagatataacaccagagatgaaaccatctttaaagggttgaacatagccactagttggaattaatataaggtgtaatagaaagaatagatt |
21579961 |
T |
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| Q |
218 |
caagagtgtcattag-nnnnnnnaaaagtgttgtttgttggagattggtttgtagaattggttacgtaggtatgagtaattggttggtgttggaatttag |
316 |
Q |
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| T |
21579962 |
caagagtgtcattagttttttttgaaagtgttgtttgttggagattggtttgtggaattggttacgtaggtatgaagaattggttggtgttggaatttag |
21580061 |
T |
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| Q |
317 |
at |
318 |
Q |
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|| |
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| T |
21580062 |
at |
21580063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 21576145 - 21576359
Alignment:
| Q |
18 |
ccaacaagtgggacatatgcagtattctcaatcttaggtaacttaagaagaacaatagtttcaatacatttctctatcaacaaatccttagcaaaatcaa |
117 |
Q |
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| T |
21576145 |
ccaacaagtggaacatatgcagtattctcaatcttaggtaacttaacaaaaacaatagtttcaatacctttctctatcaacaaatccttagcaaaatcaa |
21576244 |
T |
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| Q |
118 |
gacccttgttagatataacaccagagatgaaaccatcttcaaagggttgaacatagccacttgttggaattaataaaaggtataatagaaagaagagatt |
217 |
Q |
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| T |
21576245 |
gacctttgttggatataacaccagagatgaaaccatcttcaaagggttggttagaagcgattgttggaattaatagaaggtgtgatagaaagaagagatt |
21576344 |
T |
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| Q |
218 |
caagagtgtcattag |
232 |
Q |
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| T |
21576345 |
caagagtttcattag |
21576359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 21576400 - 21576466
Alignment:
| Q |
251 |
ttgttggagatt--ggtttgtagaa-ttggttacgtaggtatgagtaattggttggtgttggaattt |
314 |
Q |
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| T |
21576400 |
ttgttggagattttggtttgtagaaattggttacgtaggtataaggaattggttggtgttggaattt |
21576466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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