View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_36 (Length: 319)
Name: NF17596_high_36
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 20012355 - 20012053
Alignment:
| Q |
1 |
attccaacactgaactatttcactagacattcgagatttgaaagaccaacacaggcacccgacacaacactcacacatcaacactggtaataatttgnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
20012355 |
attccaacactgaactatttcactagacattcgagatttgaaagaccaacacaggcaccagacacagcactcacacatcaacactggtaataatttgaaa |
20012256 |
T |
|
| Q |
101 |
nnnnnntataactgaatgtaaccgcgtgtgttagtgtcgtgttggaggctggacatgcctttcatgagaagtggtagtgctatatatgagtgattcaatt |
200 |
Q |
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| T |
20012255 |
aaaaaatataattgaatgtaaccgcgtgtgttagtgtcgtgttggaggctggacatgcctttcatgagaagtggtagtgctatatatgagtgattcaatt |
20012156 |
T |
|
| Q |
201 |
aaactcatcaaacaaaatagcatcatattcaagactatctttgcactggtaaatgatattcaacgtctccatacaaaaaatgaaacaagagtgaactaat |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20012155 |
aaactcatcaaacaaaatagcaacatattcaagactatctttgcactggtaaatgatattcaacgtctccatacaaaaaatgaaacaagagtgaactaat |
20012056 |
T |
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| Q |
301 |
aat |
303 |
Q |
| |
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||| |
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| T |
20012055 |
aat |
20012053 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 6294626 - 6294578
Alignment:
| Q |
49 |
acacaggcacccgacacaacactcacacatcaacactggtaataatttg |
97 |
Q |
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|||||| |||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
6294626 |
acacagacaccagacacggcactcacacatcaacactgataataatttg |
6294578 |
T |
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