View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_38 (Length: 302)
Name: NF17596_high_38
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_38 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 4069147 - 4069447
Alignment:
| Q |
1 |
caattgccaaaactttttgtcattccaccaatagttattagaagcacaatttggatgaattaaggtttgactttgacatccactgacatcaaatccttgg |
100 |
Q |
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| T |
4069147 |
caattgccaaaacttttgttcattccaccaatagttattagaagcacaatttggatcaattaaggtttgactttgacatccactgacatcaaatccttgg |
4069246 |
T |
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| Q |
101 |
aagtttgctttgaaaggtgcatttgtccaatttattttggctttccctccatctgttgcccaattttcaccattccataaacttgcttgtacttgcattg |
200 |
Q |
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| T |
4069247 |
aagtttgctttgaaaggtgcatttgtccaatttattttggctttccctccatctgttgcccaattttcaccattccacaaacttgcttgtacttgcattg |
4069346 |
T |
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| Q |
201 |
cctttgatgggtatcccactccaatgttgctattgttcttgtataccctaatggggatattgtccacataaaatctgccaagccaagttttgatcagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4069347 |
cctttgatgggtatcccactccaatgttgctattgtccttgtataccctaatggggatattgtccacataaaatctg-caagccaagttttgatcagatt |
4069445 |
T |
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| Q |
301 |
tg |
302 |
Q |
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| T |
4069446 |
tg |
4069447 |
T |
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