View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_4 (Length: 695)
Name: NF17596_high_4
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 19 - 683
Target Start/End: Original strand, 51273456 - 51274120
Alignment:
| Q |
19 |
caagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaattt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273456 |
caagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaattt |
51273555 |
T |
|
| Q |
119 |
atcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaatctcacag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51273556 |
atcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctcacag |
51273655 |
T |
|
| Q |
219 |
ctccaattcattgaacgatcaattcttcatcaccatactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273656 |
ctccaattcattgaacgatcaattcttcatcaccatactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctcaa |
51273755 |
T |
|
| Q |
319 |
agcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaact |
418 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51273756 |
agcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaact |
51273855 |
T |
|
| Q |
419 |
tgacaatataacaagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctac |
518 |
Q |
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| T |
51273856 |
tgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctac |
51273955 |
T |
|
| Q |
519 |
catgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttg |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
51273956 |
catgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactagaaggctttg |
51274055 |
T |
|
| Q |
619 |
tttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
683 |
Q |
| |
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| T |
51274056 |
tttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 48403187 - 48403146
Alignment:
| Q |
289 |
agaaaaaatggcacttcaattttatctcaaagcgtaaacttc |
330 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
48403187 |
agaaagaatggcacttcaattttatctcaaagtgtaaacttc |
48403146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 5051910 - 5051458
Alignment:
| Q |
20 |
aagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggagaattta |
119 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||| ||| |
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| T |
5051910 |
aagtatcagaatcaattatccaatttaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggagaactta |
5051812 |
T |
|
| Q |
120 |
tcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatcaatctcaaagcgtttcttagctttaatctcacagc |
219 |
Q |
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||||||||| ||| ||| ||||||||||||||||| |||||||||||| |||||| |||||||| ||| ||||||| |||||||| |||||||||||| |
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| T |
5051811 |
tcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagc |
5051713 |
T |
|
| Q |
220 |
tccaattcattgaacgatcaattcttcatcacca---tactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaattttatctc |
316 |
Q |
| |
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||||||||| |||||| || ||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||| |
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|
| T |
5051712 |
tccaattcaatgaacggccagttcttcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccagaaaag-tagcacttcaattttatctc |
5051614 |
T |
|
| Q |
317 |
aaagcgtaaacttctcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaa |
416 |
Q |
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|||||||||||| ||| | | ||||||| | ||||| ||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| |||||| |
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| T |
5051613 |
aaagcgtaaactcctcgtatggttctcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaa |
5051514 |
T |
|
| Q |
417 |
cttgacaatataacaagnnnnnnncatgtcttatattcgagaattgtcggattttca |
473 |
Q |
| |
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|| |||||||||||||| ||| |||||||||||||||||| ||||||||| |
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| T |
5051513 |
ctcgacaatataacaagataaaatcat-ccttatattcgagaattgttggattttca |
5051458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 529 - 683
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
529 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
627 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
|
| Q |
628 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
683 |
Q |
| |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 331 - 628
Target Start/End: Original strand, 14907797 - 14908094
Alignment:
| Q |
331 |
tcatttcgttctcaccaaatcttaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatcctaaacttgacaatataac |
430 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| |||||||| ||||||||||| |
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|
| T |
14907797 |
tcatttcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataac |
14907896 |
T |
|
| Q |
431 |
aagnnnnnnncatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtagagtctaccatgtatgcaac |
530 |
Q |
| |
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||| |||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
14907897 |
aagaaaataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaac |
14907996 |
T |
|
| Q |
531 |
atcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
628 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||| ||| | ||||||||||||| |||||| ||||||| ||||| |
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|
| T |
14907997 |
atcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcataatgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 85 - 258
Target Start/End: Original strand, 14907599 - 14907773
Alignment:
| Q |
85 |
tagcaatatatactaaaatcaacatggagaatttatcagatgatttattgatagagatatggagtcgtgtttcatacaagacagcagtgagttgcaaatc |
184 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| |||||| |
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| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
|
| Q |
185 |
aatctcaaagcgtttcttagcttt-aatctcacagctccaattcattgaacgatcaattcttcatcaccatactt |
258 |
Q |
| |
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||||||||||| |||||||||| ||| ||| | ||||||||||||||| |||| ||| ||||||||||||||| |
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|
| T |
14907699 |
catctcaaagcgcatcttagctttaaatttcaaatctccaattcattgaatgatccattattcatcaccatactt |
14907773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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