View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17596_high_40 (Length: 298)
Name: NF17596_high_40
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 40 - 279
Target Start/End: Original strand, 36373292 - 36373531
Alignment:
| Q |
40 |
gtttcatatgtcataagatcggttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatattagtggtcctatgaatgttttgaacttcaaat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36373292 |
gtttcatatgtcataagatcggttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatattagtggtccaatgaatgttttgaacttcaaat |
36373391 |
T |
|
| Q |
140 |
cctgtgatgatggtaagagtggtccaaaggttaataaggaaaatcagttgactgatgctaaaggaaagaacgctgttgatgtgttaaatcatgagccata |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373392 |
cctgtgatgatggtaagagtggtccaaaggttaataaggaaaatcagttgactgatgctaaaggaaagaacgctgttgatgtgttaaatcatgagccata |
36373491 |
T |
|
| Q |
240 |
caatgagtctccattatcatgtgatgaagaaggtggttat |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36373492 |
caatgagtctccattatcatgtgatgaagaaggtggttat |
36373531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 32252580 - 32252523
Alignment:
| Q |
52 |
ataagatcggttcaaaacaagattgtgtatgaagttatgggcaatgatcctaatatta |
109 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||||| |||||| || |||||| |
|
|
| T |
32252580 |
ataagatctgtgcaaaacaagattgtgtatcaagttatgggaaatgatactgatatta |
32252523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University