View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_45 (Length: 281)
Name: NF17596_high_45
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 16464185 - 16463933
Alignment:
| Q |
11 |
cacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactcatcaaacaataataatttagttccg |
110 |
Q |
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| T |
16464185 |
cacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactcatcaaacaataataatttagttccg |
16464086 |
T |
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| Q |
111 |
ctaaccgnnnnnnnnnnnnnnnnnnnnnngttgtttctattttaagctaattaatgtattagttttctgaggaattgttgttaattttgcaaggttttaa |
210 |
Q |
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| T |
16464085 |
ctaaccgaaaagaagaaaaagaaaaaaaagttgtttctattttaagctaattaatgtactagttttctgaggaattgttattaattttgcaaggttttaa |
16463986 |
T |
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| Q |
211 |
tttgtggtgtatgatagatgttggtgaggaaatatatccttccaagttccaac |
263 |
Q |
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| T |
16463985 |
tttgtggtgtatgatagatgttggtgaggaaatatatccttccaagttccaac |
16463933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 16471207 - 16471115
Alignment:
| Q |
11 |
cacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactcatcaaacaataataattt |
103 |
Q |
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| T |
16471207 |
cacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcacctgatatgctttcacatttagagaactcatcagacaataagaattt |
16471115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 16493679 - 16493604
Alignment:
| Q |
11 |
cacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactca |
86 |
Q |
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| T |
16493679 |
cacagaacttaaaatggagagaagtcttcgtctgcttcgattgtcatctgatatgctttcagatttagagaactca |
16493604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 16471081 - 16471036
Alignment:
| Q |
140 |
gttgtttctattttaagctaattaatgtattagttttctgaggaat |
185 |
Q |
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| T |
16471081 |
gttgtttctattttaagctaattaatgtactagttttctgaggaat |
16471036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 16499058 - 16499019
Alignment:
| Q |
11 |
cacagaacttaaaatggagagaagtcttcgtttgcttcgc |
50 |
Q |
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| T |
16499058 |
cacagaacttaaaatggagagaagtcttcgtttgcttcgc |
16499019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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