View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_46 (Length: 270)
Name: NF17596_high_46
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_46 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 16572772 - 16572964
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16572772 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgctaag |
16572871 |
T |
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| Q |
119 |
agtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctatt |
211 |
Q |
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| T |
16572872 |
agtaatgaaagagctacagaagtatgattaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctatt |
16572964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 16874654 - 16874845
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
16874654 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcaggctttggcgttcgaattgactgagaaattatccatccttgctaag |
16874753 |
T |
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| Q |
119 |
agtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctatt |
211 |
Q |
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| T |
16874754 |
agtaatgaaagagctacagaagcatggttaggaagtgtcggttggattgcactgccgctcctacaggtggcaggcgtgaagac-tgtcctatt |
16874845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 16580793 - 16580980
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
16580793 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaaattatccatccttgctaag |
16580892 |
T |
|
| Q |
119 |
agtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtc |
206 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||||||||||| |
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| T |
16580893 |
agtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcagatggtaggcgtgaagacatgtc |
16580980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 16614587 - 16614400
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
16614587 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgaccgagaaattatccatccttgctaag |
16614488 |
T |
|
| Q |
119 |
agtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtc |
206 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||||||||||| |
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| T |
16614487 |
agtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcagatggtaggcgtgaagacatgtc |
16614400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 16875234 - 16875276
Alignment:
| Q |
228 |
tagttcaacattatataacggttcaacattaatctctacgttt |
270 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16875234 |
tagttcaacattatataacagttcaacattaatctctacgttt |
16875276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Original strand, 16581385 - 16581427
Alignment:
| Q |
228 |
tagttcaacattatataacggttcaacattaatctctacgttt |
270 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
16581385 |
tagttcaacattaaataacagttcaacattaatctctacgttt |
16581427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 16613995 - 16613953
Alignment:
| Q |
228 |
tagttcaacattatataacggttcaacattaatctctacgttt |
270 |
Q |
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| T |
16613995 |
tagttcaacattaaataacagttcaacattaatctctacgttt |
16613953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 21629540 - 21629732
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||| |||||||||||||||||| | ||| |||| |||||||||||| |
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| T |
21629540 |
ggatcaaccatctgggtgcattgtattccgaaatgttgaacactcaagggtgcaggccttggcgttcgagttgactaataaa-tatctatccttgcaaag |
21629638 |
T |
|
| Q |
119 |
agtaatgaaagagctacagaaggatggttaggaagtg-tcagttggattgcactgccgctccttcaggtggcaggcgtgaagacatgtcctatt |
211 |
Q |
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|||||||||||||||||| ||| | ||| ||| || || |||||||| || | ||||| |||||||||||| || | ||||||||||||||| |
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| T |
21629639 |
agtaatgaaagagctacataagcaaggtcaggcgatgatcggttggattacaataccgctgcttcaggtggcatgcatcaagacatgtcctatt |
21629732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 233410 - 233279
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
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|
|||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||||| ||||||||| || |
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| T |
233410 |
ggatcagccaactgggtgcattattttcagaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaattatctatccttgcagag |
233311 |
T |
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| Q |
119 |
agtaatgaaagagctacagaaggatggttagg |
150 |
Q |
| |
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|||||||||||||||||||||| | ||||||| |
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| T |
233310 |
agtaatgaaagagctacagaagcaaggttagg |
233279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 7392085 - 7392216
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
| |
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|||||| ||| ||||||||||| | |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||||| ||||||||| || |
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| T |
7392085 |
ggatcaaccaactgggtgcattattttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaattatctatccttgcagag |
7392184 |
T |
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| Q |
119 |
agtaatgaaagagctacagaaggatggttagg |
150 |
Q |
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|||||||||||||||||||||| | ||||||| |
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| T |
7392185 |
agtaatgaaagagctacagaagcaaggttagg |
7392216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 48298526 - 48298405
Alignment:
| Q |
19 |
ggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgcaaag |
118 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||||| ||||||||| || |
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| T |
48298526 |
ggatcagccaactgggtgcattattttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaattatctatccttgcagag |
48298427 |
T |
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| Q |
119 |
agtaatgaaagagctacagaag |
140 |
Q |
| |
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||||||||||||||| |||||| |
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| T |
48298426 |
agtaatgaaagagcttcagaag |
48298405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 10930 - 10841
Alignment:
| Q |
26 |
ccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgca |
115 |
Q |
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|||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
10930 |
ccatctggatgcattgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgagaaattatctatccttgca |
10841 |
T |
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