View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17596_high_47 (Length: 268)
Name: NF17596_high_47
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_47 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 4069788 - 4069535
Alignment:
| Q |
13 |
cagagaagggaaaccatatgcattacaaaccaatgtatgggcaaatggtgaaggggatagagagcaaaaaatccacctttggtttgatcccacaactgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4069788 |
cagagaagggaaaccatatgcattacaaaccaatgtatgggcaaatggtgaaggggatagagagcaaaaaatccacctttggtttgatcccacaactgat |
4069689 |
T |
|
| Q |
113 |
tttcatgactacaaaattctttggaacccacatcaaattgtgtaagatatattcatgcttctttgactcttaaaaatgtaaaaatcatttcttttataaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4069688 |
tttcatgactacaaaattctttggaacccacatcaaattgtgtaagatatattcatgctcctttgactcttaaaaatgtaaaaatcatttcttttataaa |
4069589 |
T |
|
| Q |
213 |
ctatataataaacaaacattagtataaaaggtgaacaagtctgaaactacactata |
268 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4069588 |
ctatataataaacaacccttagtataaaaggtgaacaag--tgaaactacactata |
4069535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University