View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_54 (Length: 253)
Name: NF17596_high_54
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_54 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 834961 - 834721
Alignment:
| Q |
15 |
aatatacaaataagtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaa |
114 |
Q |
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| T |
834961 |
aatatacaaaaaggtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaata---gtatatgctaaagttgacaaataaa |
834865 |
T |
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| Q |
115 |
tcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagc-----tttgtatatacctctaagtcttccttgttgtcctctcctttgcaat |
209 |
Q |
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| T |
834864 |
tcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagctttaatttgtatatacctctaagtcttccttgttgtcctctcctttgcaat |
834765 |
T |
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| Q |
210 |
ctgtatatatacttaacaatttcatcctgctccgtagcattgaa |
253 |
Q |
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| T |
834764 |
ccgtatatatactcgacaatttcatcctgctccgtagcattgaa |
834721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 253
Target Start/End: Complemental strand, 813244 - 813032
Alignment:
| Q |
36 |
agaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaat |
135 |
Q |
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||||||||||||||||||| |||||||||||| |||||| |||||||| | ||||||| | ||||| ||||||||| |||||| | ||||||||||| |
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| T |
813244 |
agaaggtgcaacaaacatgagtacaaatatgaactaatgaaaaacaaaaaa---gtatatgttgaagttaacaaataaaccaaaggaattgtgattgaat |
813148 |
T |
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| Q |
136 |
tgaagaataaaaggagaaattaagaagctttgtatatacctctaagtcttccttgttgtcctctcctttgcaatctgtatatatacttaacaatttcatc |
235 |
Q |
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| T |
813147 |
tgaagaataaa--gagaagataggaagttttgcatatacctctcagtcttccttgttgtcctctccgttgcaatatgtatatatagtcaacaatttcatt |
813050 |
T |
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| Q |
236 |
ctgctccgtagcattgaa |
253 |
Q |
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| T |
813049 |
ctgctccgtagcattgaa |
813032 |
T |
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