View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_6 (Length: 616)
Name: NF17596_high_6
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 21 - 600
Target Start/End: Complemental strand, 38819558 - 38818982
Alignment:
| Q |
21 |
ttacatatttgatatttatggtccataaatatctacagtccttccttcctctgaggttaaagttgtttgcaaagtgaagatatttcaaattttgataaat |
120 |
Q |
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| T |
38819558 |
ttacatatttcatatttatggtccataaatatctacagtccttccttcctctgaggttaaagttgtttgcaaagtggagatatttcaaattttgataaat |
38819459 |
T |
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| Q |
121 |
ttgcatgattgaagaggaaattcttagaaaacaactagtcactacataacagaaaacatggcataactaacaacaactctgcatccattaaagttcaaat |
220 |
Q |
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| T |
38819458 |
ttgcatgattgaagaggaaattcttagaaaacaactagacactacataacagaaaacatggcataactaacaac---tctgcatccattaaagttcaaat |
38819362 |
T |
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| Q |
221 |
actacagtgttgagagcaagcatatcctcttagatttggggttgagtctaatacaccacctcacaccgaggactaaagtaacatgatggcgggtaactta |
320 |
Q |
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| T |
38819361 |
actacagtgttgagagcaagcatatcctcttagatttggggttgagtctaatacaccacctcacaccgaggactaaagtaacatgatggcgggtaactta |
38819262 |
T |
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| Q |
321 |
caactacaaagccagtttataagatgatggatagctcaaactcccacattgaatgattgtcaaggctatggttatgaaaatttatcaatattaaattaat |
420 |
Q |
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| T |
38819261 |
caactacaaagccagtttataagatgatggatagctcaaactcccacattgaatgattgtcaaggctatggttatgaaaatttatcaatattaaattaat |
38819162 |
T |
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| Q |
421 |
agatgttttttcttgcaaaacttcacctgcataagatgtaggtctgatacataaaccgatgttaaattaaattagtttttaatgttaaatttgctggatg |
520 |
Q |
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| T |
38819161 |
agatgttttttcttgcaaaacttcacctgcataagatggaggtctgatacatgcaccgatgttaaattaaattagtttttaatgttaaatttgctggatg |
38819062 |
T |
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| Q |
521 |
actcgaatgacactgattgacgcccaagacctattcgaggtcaaggtagatatctatcaggtcatggcggtccttcaccc |
600 |
Q |
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| T |
38819061 |
actcgaatgacactgattgacgcccaagacctattcgaggtcaaggtagatatctatcaggtcatggcggtccttcaccc |
38818982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 355 - 468
Target Start/End: Original strand, 48468946 - 48469059
Alignment:
| Q |
355 |
ctcaaactcccacattgaatgattgtcaaggctatggttatgaaaatttatcaatattaaattaatagatgttttttcttgcaaaacttcacctgcataa |
454 |
Q |
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| T |
48468946 |
ctcaaactcccacattgaatgattgtcaaggctatggttatgaaaatttatcaatattaaattaatagatgttttttcttgcaaaatttcatctgcataa |
48469045 |
T |
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| Q |
455 |
gatgtaggtctgat |
468 |
Q |
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| T |
48469046 |
gatgtaggtctgat |
48469059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 48468565 - 48468686
Alignment:
| Q |
128 |
attgaagaggaaattcttagaaaacaactagtcactacataacagaaaacatggcataactaacaacaactctgcatccattaaagttcaaatactacag |
227 |
Q |
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| T |
48468565 |
attgaagagaaaattcttggaaaacaactagtcaccacataacagaaaacatggcataact---aacaactctgcatccattaaaattcaaatactatag |
48468661 |
T |
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| Q |
228 |
tgttgagagcaagcatatcctctta |
252 |
Q |
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| T |
48468662 |
tgttgagagcaagcatatcctctta |
48468686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 48468474 - 48468554
Alignment:
| Q |
15 |
aataacttacatatttgatatttatggtccataaatatctacagtccttccttcctctgaggttaaagttgtttgcaaagt |
95 |
Q |
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|||||||| |||| |||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||| |
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| T |
48468474 |
aataacttgcatacttgatatttatggtccattaatatttacagtccttccttgctctgaggttaaagttgtttacaaagt |
48468554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 542 - 599
Target Start/End: Original strand, 50013801 - 50013858
Alignment:
| Q |
542 |
gcccaagacctattcgaggtcaaggtagatatctatcaggtcatggcggtccttcacc |
599 |
Q |
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| T |
50013801 |
gcccaagacctatttgaggtcaaggtagttatttgtcagatcatggcagtccttcacc |
50013858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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