View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_high_7 (Length: 615)

Name: NF17596_high_7
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_high_7
NF17596_high_7
[»] chr3 (9 HSPs)
chr3 (17-608)||(26444708-26445299)
chr3 (90-287)||(2353181-2353378)
chr3 (100-250)||(19930008-19930157)
chr3 (88-226)||(9372208-9372346)
chr3 (141-250)||(42253534-42253643)
chr3 (121-229)||(42256809-42256921)
chr3 (174-227)||(19935230-19935283)
chr3 (85-156)||(14654853-14654924)
chr3 (85-200)||(14658109-14658224)
[»] chr1 (8 HSPs)
chr1 (55-406)||(21501066-21501425)
chr1 (233-421)||(8040728-8040915)
chr1 (100-226)||(43254110-43254236)
chr1 (129-229)||(49387599-49387699)
chr1 (117-252)||(9111511-9111646)
chr1 (98-213)||(38825486-38825602)
chr1 (98-226)||(38828683-38828812)
chr1 (125-251)||(24981133-24981259)
[»] chr2 (7 HSPs)
chr2 (183-425)||(65967-66210)
chr2 (129-394)||(27082917-27083183)
chr2 (82-156)||(27107280-27107354)
chr2 (163-229)||(10941419-10941484)
chr2 (163-229)||(10947288-10947353)
chr2 (174-229)||(10938058-10938112)
chr2 (113-220)||(18739113-18739221)
[»] chr7 (8 HSPs)
chr7 (89-237)||(15569550-15569698)
chr7 (82-229)||(13815715-13815862)
chr7 (89-250)||(2609574-2609735)
chr7 (113-226)||(32352425-32352538)
chr7 (97-208)||(15169927-15170038)
chr7 (125-225)||(31206623-31206723)
chr7 (150-251)||(22301122-22301224)
chr7 (125-220)||(39426453-39426548)
[»] scaffold0076 (1 HSPs)
scaffold0076 (82-256)||(6726-6900)
[»] chr4 (9 HSPs)
chr4 (100-225)||(31767445-31767570)
chr4 (83-252)||(895421-895590)
chr4 (100-250)||(13250497-13250648)
chr4 (100-226)||(43287843-43287970)
chr4 (100-250)||(4747185-4747332)
chr4 (163-229)||(13010526-13010593)
chr4 (100-226)||(43472099-43472224)
chr4 (125-220)||(6667721-6667816)
chr4 (125-225)||(44643473-44643572)
[»] chr6 (8 HSPs)
chr6 (113-229)||(2936141-2936257)
chr6 (82-205)||(3835677-3835800)
chr6 (138-229)||(24044926-24045017)
chr6 (97-200)||(14579611-14579714)
chr6 (82-236)||(19973658-19973799)
chr6 (135-229)||(24041623-24041717)
chr6 (82-146)||(19976076-19976140)
chr6 (113-220)||(19697847-19697955)
[»] chr8 (3 HSPs)
chr8 (171-383)||(41739716-41739934)
chr8 (174-229)||(33940435-33940490)
chr8 (125-220)||(1788901-1788996)
[»] scaffold0028 (2 HSPs)
scaffold0028 (100-252)||(110116-110268)
scaffold0028 (100-225)||(127695-127820)
[»] chr5 (5 HSPs)
chr5 (92-220)||(13291940-13292068)
chr5 (126-256)||(39292120-39292250)
chr5 (127-207)||(26703032-26703113)
chr5 (127-207)||(26972765-26972846)
chr5 (125-287)||(18594835-18594995)
[»] scaffold0002 (1 HSPs)
scaffold0002 (82-196)||(448698-448809)
[»] scaffold0216 (1 HSPs)
scaffold0216 (81-156)||(12089-12164)
[»] scaffold0293 (1 HSPs)
scaffold0293 (125-197)||(4950-5022)
[»] scaffold0933 (2 HSPs)
scaffold0933 (174-224)||(813-863)
scaffold0933 (120-156)||(1111-1147)


Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 608
Target Start/End: Complemental strand, 26445299 - 26444708
Alignment:
Q  17 aaatagtgcccacaatagaattcagaaataaacatctactctttcaatattttttcttgtcttatatctcctgtgtttagcaaattcaagttcttatgtc 116  Q
    |||||||||||| |||||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||    
T  26445299 aaatagtgcccataatagaatccagaaatatacttccactctttcaatattttttcttgtgttatatctcctgtgtttagcaaattcaaattgttatgtc 26445200  T
Q  117 acctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgc 216  Q
     ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26445199 gcctctgatatgattcatatcagggaagaacatgttgtatcttgacaggatatacgattatgaggcggataaatccttaaggacagtgactttgtcatgc 26445100  T
Q  217 ctcatgttatatatttgtttattattttgcaggttacatatgagttgttggtgaatgatattgatagagttatgtcagtactctagctatctaaaattat 316  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  26445099 ctcatgttatatatccgtttattattttgcaggttacatatgagttgttggtgaaggatattgatagagttatgtcagtactctagctatctaaaattag 26445000  T
Q  317 taaggacaaataaatttatcgatccttctcttttgcttatattcaattgatgtttatatggatatgttaatttttatttgagaataattttacgcttaat 416  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26444999 taaggacagataaatttatcgatccttctcttttgcttatattcaattgatgtttatatgtatatgttaatttttatttgagaataattttacgcttaat 26444900  T
Q  417 tttacaacattcactacatgcataatactttgtatagttgattaattnnnnnnnggaattgagacgacaatcatatgatgatatatgttaattaggagga 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       || ||| |||||||||||||||||||||||||||||||||||||||    
T  26444899 tttacaacattcactacatgcataatactttgtatagttgattaattaaaaaaggg-attcagacgacaatcatatgatgatatatgttaattaggagga 26444801  T
Q  517 gaaaaaagatcttactaagaatatattgtcaactaaggtatagtccaaatttttatagctggca-tttatgcatgatgttttaggagcctatt 608  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  26444800 gaaaaaagatcttactaagaatatattgtcaactaaggtgtaatccaaatttttatagctggcattttatgaatgatgttttaggagcctatt 26444708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 2353181 - 2353378
Alignment:
Q  90 tgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaa 189  Q
    |||||| |||||||||||| || |||||||||| |||||||||||||||| ||||||| ||||||||  ||  ||||||  |  ||||||||||||||||    
T  2353181 tgtttatcaaattcaagttgttctgtcacctcttatatgattcatatcagagaagaacctgttgtatcctgggaggataagcacttatgaggcggataaa 2353280  T
Q  190 tccttaaggacggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggttacatatgagttgttggtgaatgatattgatagagtt 287  Q
    |||||||||||  ||||||  |||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||| |  || |||||||||||    
T  2353281 tccttaaggacaatgacttcatcatgcctcaggttatataacggtttattattttgcaggttacatatgagttgttggtggagaatgttgatagagtt 2353378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 100 - 250
Target Start/End: Complemental strand, 19930157 - 19930008
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaagga 199  Q
    ||||||||| || | ||||||||||| |||||||| ||||||||||||||||||||| | |  ||||||| || ||||||||||||||||||||||||||    
T  19930157 attcaagttgttctatcacctctgatgtgattcatctcagggaagaacatgttgtatctggg-aggatatgcgcttatgaggcggataaatccttaagga 19930059  T
Q  200 cggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggt 250  Q
    |||||||||||||| |||||||||||||||   ||||| ||||||||||||    
T  19930058 cggtgactttgtcacgcctcatgttatataacggtttactattttgcaggt 19930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 226
Target Start/End: Complemental strand, 9372346 - 9372208
Alignment:
Q  88 tgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggata 187  Q
    |||||||| |||||| |||||  | |||||||||| ||||||||||||||||||| |||| ||||||||  ||  | ||||| || |||||||||| |||    
T  9372346 tgtgtttatcaaatttaagttgctttgtcacctctcatatgattcatatcagggatgaacctgttgtatcctgggacgatatgcgcttatgaggcgaata 9372247  T
Q  188 aatccttaaggacggtgactttgtcatgcctcatgttat 226  Q
    ||||||||||||| ||||||| ||||||||||| |||||    
T  9372246 aatccttaaggacagtgacttcgtcatgcctcaggttat 9372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 42253643 - 42253534
Alignment:
Q  141 gaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatatatttgtttatta 240  Q
    ||||||||||||||||  |   ||||||| || ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||   ||||| ||    
T  42253643 gaagaacatgttgtatccttggaggatatgcgcttatgaggcgggtaaatccttaaggacagtgactttgtcacgcctcatgttatataacggtttacta 42253544  T
Q  241 ttttgcaggt 250  Q
    ||||||||||    
T  42253543 ttttgcaggt 42253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 42256921 - 42256809
Alignment:
Q  121 ctgatatgattcatatcagggaagaacatgttgtattttgccaggatata----cgattatgaggcggataaatccttaaggacggtgactttgtcatgc 216  Q
    ||||| |||||||||||||||||||| |||||||||  ||  || |||||    || |||||| | |||||||||||||| ||| |||| ||||||| ||    
T  42256921 ctgatgtgattcatatcagggaagaatatgttgtatcctgggagtatatatatgcgcttatgaagaggataaatccttaaagacagtgattttgtcacgc 42256822  T
Q  217 ctcatgttatata 229  Q
    |||||||||||||    
T  42256821 ctcatgttatata 42256809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 19935283 - 19935230
Alignment:
Q  174 ttatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttata 227  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||| |||||    
T  19935283 ttatgaggaggataaatccttaaggacagtgactttgtcacgcctcatattata 19935230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 14654853 - 14654924
Alignment:
Q  85 tcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtat 156  Q
    ||||||| ||| ||| |||||||| || |||||||||||| ||||||||| |||| ||||||| ||||||||    
T  14654853 tcctgtgattatcaacttcaagttgttctgtcacctctgacatgattcatgtcagagaagaacctgttgtat 14654924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 14658109 - 14658224
Alignment:
Q  85 tcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcgg 184  Q
    ||||||| ||| ||| || ||||| || |||||||||||| ||||||||| | || ||||||  ||||||||  ||  ||||||| || |||||| || |    
T  14658109 tcctgtgattatcaactttaagttgttctgtcacctctgacatgattcatgttagagaagaatttgttgtatcctggaaggatatgcgcttatgatgcag 14658208  T
Q  185 ataaatccttaaggac 200  Q
    ||||||||||||||||    
T  14658209 ataaatccttaaggac 14658224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 4e-95; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 55 - 406
Target Start/End: Complemental strand, 21501425 - 21501066
Alignment:
Q  55 ctctttcaatattttttcttgtcttatatctcctgtgtttagcaaattcaagttcttatgtcacctctgatat---------gattcatatcagggaaga 145  Q
    |||||||||||||||| || |  ||||||||| ||||||||| ||||||||||| || | ||| |||||||||         |||| |||| || |||||    
T  21501425 ctctttcaatatttttcctggg-ttatatctcttgtgtttagaaaattcaagttgttctatcatctctgatatgattgatatgatttatattagagaaga 21501327  T
Q  146 acatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatatatttgtttattattttg 245  Q
    |||||||||||  |   |||||||||  ||||||| ||||||||||||||| ||  | |||||||||| ||||||| |||||||  | ||||||||||||    
T  21501326 acatgttgtatcctaggaggatatacacttatgagacggataaatccttaaagatagcgactttgtcacgcctcatattatataactatttattattttg 21501227  T
Q  246 caggttacatatgagttgttggtgaatgatattgatagagttatgtcagtactctagctatctaaaattattaaggacaaataaatttatcgatccttct 345  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  21501226 caggttacatatgagttgttggtgaaggacattgacagagttatgtcagtactctagctatctaaaattattaagaacatataagtttatcgatccttct 21501127  T
Q  346 cttttgcttatattcaattgatgtttatatggatatgttaatttttatttgagaataattt 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21501126 cttttgcttatattcaattgatgtttatatgtatatgttaatttttatttgagaataattt 21501066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 233 - 421
Target Start/End: Original strand, 8040728 - 8040915
Alignment:
Q  233 gtttattattttgcaggttacatatgagttgttggtgaatgatattgatagagttatgtcagtactctagctatctaaaattattaaggacaaataaatt 332  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| ||    
T  8040728 gtttattattttgcaagttacatataagttgttggtgaa-gatattgacagagttatgtcagtactctagctatataaaattattaaggacatataagtt 8040826  T
Q  333 tatcgatccttctcttttgcttatattcaattgatgtttatatggatatgttaatttttatttgagaataattttacgcttaattttac 421  Q
    ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  8040827 tatcgatccttctcttttatttatattcaattgatgtttatatgtatatgttaatttttatttgagaataattttacgtttaattttac 8040915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 43254110 - 43254236
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaagga 199  Q
    ||||||||| || ||||||||||||||||||||||||  ||||||||||||||||||  ||  ||||||| || |||||||||| |||||||||||||||    
T  43254110 attcaagttgttctgtcacctctgatatgattcatatatgggaagaacatgttgtatcctgggaggatatgcgcttatgaggcgaataaatccttaagga 43254209  T
Q  200 cggtgactttgtcatgcctcatgttat 226  Q
    | |||||||||||| ||||||||||||    
T  43254210 cagtgactttgtcacgcctcatgttat 43254236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 49387699 - 49387599
Alignment:
Q  129 attcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatat 228  Q
    ||||| ||||||||||||||||||||||  ||  ||||||| || |||| ||||| |||||||||||||| | |||||||||||| ||||||||||||||    
T  49387699 attcacatcagggaagaacatgttgtatcctgggaggatatgcgcttataaggcgaataaatccttaaggccagtgactttgtcacgcctcatgttatat 49387600  T
Q  229 a 229  Q
    |    
T  49387599 a 49387599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 9111646 - 9111511
Alignment:
Q  117 acctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaa-tccttaaggacggtgactttgtcatg 215  Q
    ||||||||||||||| ||||||| ||||||| ||||||||  ||  | ||||| || |||||||||||||||| |||| |||||| |||||| ||||| |    
T  9111646 acctctgatatgatttatatcagtgaagaac-tgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacg 9111548  T
Q  216 cctcatgttatatatttgtttattattttgcaggtta 252  Q
    |||||  |||||||   ||||| ||||||||||||||    
T  9111547 cctcagattatataacagtttactattttgcaggtta 9111511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 38825602 - 38825486
Alignment:
Q  98 aaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaa 196  Q
    ||||||||||| || || ||||| |||||||||||||| ||| ||||||| ||||||||  ||  ||||||| || |||||||| |||| ||||||||||    
T  38825602 aaattcaagttgttctgccacctttgatatgattcatagcagagaagaacttgttgtatcctgggaggatatgcgtttatgaggaggataaaatccttaa 38825503  T
Q  197 ggacggtgactttgtca 213  Q
    |||| ||||||| ||||    
T  38825502 ggacagtgacttcgtca 38825486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 226
Target Start/End: Complemental strand, 38828812 - 38828683
Alignment:
Q  98 aaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaa 196  Q
    ||||||||||| || || || |||||||||||||||||  |||||||||| |||| |||  ||  | |||||  | |||| |||||||| ||||||||||    
T  38828812 aaattcaagttgttctgccaactctgatatgattcatagtagggaagaacttgttttatcctgggaagatatgagcttataaggcggataaaatccttaa 38828713  T
Q  197 ggacggtgactttgtcatgcctcatgttat 226  Q
    |||  ||||||| |||| |||||| |||||    
T  38828712 ggatagtgacttcgtcacgcctcaagttat 38828683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 24981259 - 24981133
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaa-tccttaaggacggtgactttgtcatgcctcatgt 223  Q
    ||||||||||| | ||||||||| ||||||||  ||  |||||||  | |||||||||||||||| |||| ||||||| ||||| ||||| |||||| ||    
T  24981259 tatgattcataacggggaagaac-tgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggt 24981161  T
Q  224 tatatatttgtttattattttgcaggtt 251  Q
    || ||| | || | || |||||||||||    
T  24981160 tacataatagtattttgttttgcaggtt 24981133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 183 - 425
Target Start/End: Complemental strand, 66210 - 65967
Alignment:
Q  183 ggataaatccttaaggacggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggttacatatgagttgttggtgaatgatattgata 282  Q
    ||||||||||||||  |  |||||||| ||| ||||||||||||| |  | |||||||||||  | ||||||||||||||||||||||| |||||||| |    
T  66210 ggataaatccttaaatatagtgactttatcacgcctcatgttatacaactatttattattttataagttacatatgagttgttggtgaaagatattgaca 66111  T
Q  283 gagttatgtcagtactctagctatctaaaattattaaggacaaataaatttatcgatccttctcttttgcttatattcaattgatgtttatatggatatg 382  Q
    ||||||||| || || |||||||||||||| ||||||||| | |||| | || | |||||||||||||||||||||||||||||||| |||||| ||||     
T  66110 gagttatgttagcaccctagctatctaaaaatattaaggatacataagtgtaaccatccttctcttttgcttatattcaattgatgtatatatgcatata 66011  T
Q  383 ttaatttttatttgagaataa-ttttacgcttaattttacaaca 425  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  66010 ttaatttttatttgagaataatttttacgcttaattttacaaca 65967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 129 - 394
Target Start/End: Complemental strand, 27083183 - 27082917
Alignment:
Q  129 attcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatat 228  Q
    |||||||| |||||||||| ||||||||  ||  ||||||| || || |||||||||||||||||| ||||| | |||||||||||||||||| ||||||    
T  27083183 attcatattagggaagaacctgttgtatcctgggaggatatgcgcttgtgaggcggataaatccttcaggacagcgactttgtcatgcctcatcttatat 27083084  T
Q  229 atttgtttatta-ttttgcaggttacatatgagttgttggtgaatgatattgatagagttatgtcagt-actctagctatctaaaattattaaggacaaa 326  Q
    |   |||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||| |||||| | |  || | |||  |||| || || ||||| |    
T  27083083 aacagtttattatttttgtaggttacat-tgagttgttggtgaaggatattgatagagtcatgtcattgaacctggttatacaaaaatactagggacaga 27082985  T
Q  327 taaatttatcgatccttctcttttgcttatattcaattgatgtttatatggatatgttaatttttatt 394  Q
    ||| ||||| ||||  ||||||||||||||||| |||||||||| ||||| ||||||||||| |||||    
T  27082984 taagtttattgatctatctcttttgcttatatttaattgatgttcatatgtatatgttaattattatt 27082917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 27107280 - 27107354
Alignment:
Q  82 atctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtat 156  Q
    |||||||||||||| || ||||||| | || ||||||||||||| ||||| | ||||||||||||||||||||||    
T  27107280 atctcctgtgtttatcagattcaagctgttctgtcacctctgatgtgatttacatcagggaagaacatgttgtat 27107354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 10941484 - 10941419
Alignment:
Q  163 aggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    ||||||| || |||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||    
T  10941484 aggatatgcgcttatgaggcgaataaatccttaaggacagtgac-ttgtcacgcctcatgttatata 10941419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 10947353 - 10947288
Alignment:
Q  163 aggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    ||||||| || |||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||    
T  10947353 aggatatgcgcttatgaggcgaataaatccttaaggacagtgac-ttgtcacgcctcatgttatata 10947288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 10938112 - 10938058
Alignment:
Q  174 ttatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    |||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||    
T  10938112 ttatgaggcgaataaatccttaaggacagtgac-ttgtcacgcctcatgttatata 10938058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 18739221 - 18739113
Alignment:
Q  113 tgtcacctctgat-atgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgactttg 210  Q
    ||||||||| ||| |||||||||| | |||||||||  |||||||| ||  ||||||| || ||||||||||||| ||||||| |||||| |||||| ||    
T  18739221 tgtcacctccgattatgattcataacggggaagaacc-gttgtattgtgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatg 18739123  T
Q  211 tcatgcctca 220  Q
    ||| ||||||    
T  18739122 tcacgcctca 18739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 15569550 - 15569698
Alignment:
Q  89 gtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataa 188  Q
    ||||||| || |||| |||| || ||||||||||||||||||||||||||| ||||||| ||||||||  ||  |||||||  | |||||||||||||||    
T  15569550 gtgtttaacagattcgagttgttctgtcacctctgatatgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggataa 15569649  T
Q  189 atccttaaggacggtgactttgtcatgcctcatgttatatatttgttta 237  Q
    |||| ||||||| |||||||||||| |||||| ||||||||| ||||||    
T  15569650 atccctaaggacagtgactttgtcacgcctcaggttatatatatgttta 15569698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 13815715 - 13815862
Alignment:
Q  82 atctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgagg 181  Q
    ||||| |||||||| || ||||||| | || ||||||||||||| ||||||| || |||||||||||||||||||  ||  | ||||| || ||||||||    
T  13815715 atctcttgtgtttatcagattcaagctgttctgtcacctctgatgtgattcacattagggaagaacatgttgtatcctgggaagatatgcgcttatgagg 13815814  T
Q  182 cggataaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    || |||||||||||||||| |||||||||||| |||||||||||||||    
T  13815815 cgaataaatccttaaggacagtgactttgtcacgcctcatgttatata 13815862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 2609735 - 2609574
Alignment:
Q  89 gtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataa 188  Q
    ||||||| ||||||| |||| || |||||| |||||||||||||||||||| ||||||||||||||||  ||| ||||||| || ||||||| | |||||    
T  2609735 gtgtttaacaaattcgagttgttctgtcacatctgatatgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgagacagataa 2609636  T
Q  189 atccttaaggacggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggt 250  Q
    || ||||||||  ||||||| |||| |||||| ||||||||   | ||| ||||||||||||    
T  2609635 atacttaaggatagtgacttcgtcacgcctcaggttatataaaggcttactattttgcaggt 2609574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 32352538 - 32352425
Alignment:
Q  113 tgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtc 212  Q
    ||||||||||||| ||||||||||| | |||||| ||||||| |  ||  ||||||| || |||||||||| |||||||||||||||| |||||||||||    
T  32352538 tgtcacctctgatgtgattcatatctgagaagaatatgttgtgtcctgggaggatatgcgcttatgaggcgaataaatccttaaggacagtgactttgtc 32352439  T
Q  213 atgcctcatgttat 226  Q
    | ||||| ||||||    
T  32352438 acgcctcgtgttat 32352425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 15169927 - 15170038
Alignment:
Q  97 caaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaa 196  Q
    |||||||||||| || ||||| |||||| ||||||||| | || ||||||| ||||||||  ||  ||||||| || ||||||||| |||||||  ||||    
T  15169927 caaattcaagttgttctgtcatctctgacatgattcatgttagagaagaacctgttgtatcctgtgaggatatgcgtttatgaggctgataaatttttaa 15170026  T
Q  197 ggacggtgactt 208  Q
    |||| |||||||    
T  15170027 ggacagtgactt 15170038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 31206723 - 31206623
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgactttgtcatgcctcatgt 223  Q
    ||||||||||| | ||||||||| ||||||||  ||||||||||| || |||||||| |||| ||||||| || ||| |||||| ||||| |||||| ||    
T  31206723 tatgattcataacggggaagaac-tgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacagtgactatgtcacgcctcaggt 31206625  T
Q  224 ta 225  Q
    ||    
T  31206624 ta 31206623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 22301224 - 22301122
Alignment:
Q  150 gttgtattttgccaggatatacgattatgaggcggataaa-tccttaaggacggtgactttgtcatgcctcatgttatatatttgtttattattttgcag 248  Q
    ||||||| |||  ||||||| || |||||||||||||||| |||| |||||| |||||| ||||| |||||| |||| ||| | || | || ||||||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcag 22301125  T
Q  249 gtt 251  Q
    |||    
T  22301124 gtt 22301122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 39426548 - 39426453
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgactttgtcatgcctca 220  Q
    ||||||||||| ||||||||||| |||| ||| |||  ||||||| || ||||||| ||||| ||||||| |||||| |||||| | ||| ||||||    
T  39426548 tatgattcataacagggaagaac-tgttttatcttgggaggatattcgcttatgagacggataaaatcctcaaggacagtgactatatcacgcctca 39426453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 6900 - 6726
Alignment:
Q  82 atctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgagg 181  Q
    |||||||||||||| |||||||||||| || ||||| ||||||||||||||||||||||||| ||| ||||||||  ||  ||||||| |  ||||||||    
T  6900 atctcctgtgtttatcaaattcaagttgttctgtcatctctgatatgattcatatcagggaaaaac-tgttgtatcatggaaggatatgcacttatgagg 6802  T
Q  182 cggat-aaatccttaaggacggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggttacata 256  Q
    ||||| ||||||| || ||| |||||| ||||| ||||||  ||| ||| | ||||||| ||||||||||||||||    
T  6801 cggataaaatcctcaatgacagtgactatgtcacgcctcagtttagataatggtttattgttttgcaggttacata 6726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 31767570 - 31767445
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaagga 199  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||  |   |||||||  | ||||||||||||||||||||||||||    
T  31767570 attcaagttgttctgtcacctctgatgtgattcatatcagggaagaacatgttgtatcctaggaggatatgtgcttatgaggcggataaatccttaagga 31767471  T
Q  200 cggtgactttgtcatgcctcatgtta 225  Q
      |||| ||||||| |||||||||||    
T  31767470 tagtgattttgtcacgcctcatgtta 31767445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 83 - 252
Target Start/End: Original strand, 895421 - 895590
Alignment:
Q  83 tctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggc 182  Q
    |||||||||||||  |||||||| || || | |||||||||||||||||||||| |||||||||| | ||||||  ||  ||||||| || |||||||||    
T  895421 tctcctgtgtttattaaattcaacttgttctatcacctctgatatgattcatattagggaagaac-ttttgtatcctgggaggatatgcgcttatgaggc 895519  T
Q  183 ggat-aaatccttaaggacggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggtta 252  Q
    |||| ||||||| |||||| |||||| ||||| | |||| |||| |||   ||||| ||||||||||||||    
T  895520 ggataaaatcctcaaggacagtgactatgtcacgactcaggttagataacagtttactattttgcaggtta 895590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 250
Target Start/End: Complemental strand, 13250648 - 13250497
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgcca-ggatatacgattatgaggcggataaatccttaagg 198  Q
    ||||||| | || ||||||| ||||| ||||||||||||||||||||||| ||||||  |   | |||||| || |||||||| ||||||||| ||||||    
T  13250648 attcaagctgttctgtcaccactgatgtgattcatatcagggaagaacatattgtatcctaagaaggatatgcgcttatgaggtggataaatctttaagg 13250549  T
Q  199 acggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggt 250  Q
    |  |||||||||||| |||||||||||||||   | ||| ||||||||||||    
T  13250548 agagtgactttgtcacgcctcatgttatataacggcttactattttgcaggt 13250497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 43287843 - 43287970
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatcc-ttaagg 198  Q
    ||||||| | || ||||||||||||| ||||||||||| | |||||| |||||||||  ||  | ||||| || |||||||||| |||||||| ||||||    
T  43287843 attcaagctgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtatcctggaaagatatgcgcttatgaggcgaataaatcctttaagg 43287942  T
Q  199 acggtgactttgtcatgcctcatgttat 226  Q
    || |||||||||||| ||||||||||||    
T  43287943 acagtgactttgtcacgcctcatgttat 43287970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 250
Target Start/End: Original strand, 4747185 - 4747332
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaagga 199  Q
    ||||||||| || ||||||||  |||||||||||||  || ||||||| |||||||| |||  |||||||||| ||||||||   || ||||||||| ||    
T  4747185 attcaagttgttctgtcacct--gatatgattcatacaagcgaagaacctgttgtatcttgggaggatatacgcttatgaggtccatgaatccttaa-ga 4747281  T
Q  200 cggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggt 250  Q
    | ||||||| |||| ||||||  |||| || | ||||| | ||||||||||    
T  4747282 cagtgacttcgtcacgcctcagattatttaatggtttactgttttgcaggt 4747332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 13010593 - 13010526
Alignment:
Q  163 aggatatacgattatgaggcggat-aaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    ||||||| || ||||||||||||| ||||||| |||||| |||||| ||||| |||||| ||||||||    
T  13010593 aggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttatata 13010526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 226
Target Start/End: Original strand, 43472099 - 43472224
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaagga 199  Q
    ||||||| | || ||||||||||||| ||||| | ||| ||||||||||||||||||  |   |||||    | |||||||||| |||||||| ||||||    
T  43472099 attcaagctgttctgtcacctctgatgtgatt-agatctgggaagaacatgttgtatcctaggaggatgcgtgcttatgaggcgaataaatccctaagga 43472197  T
Q  200 cggtgactttgtcatgcctcatgttat 226  Q
    | |||| |||||||  |||||||||||    
T  43472198 cagtgattttgtcacacctcatgttat 43472224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 6667816 - 6667721
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgactttgtcatgcctca 220  Q
    ||||||||||| | ||||||||| ||||||||  ||  ||||||| || ||||||||||||| ||||||| ||| || |||||| ||||| ||||||    
T  6667816 tatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgtcacgcctca 6667721  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 44643473 - 44643572
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgtt 224  Q
    ||||||||||||| ||||||||| ||||||||  |   ||||||| || |||||||||||||| |  || |||||| |||||| ||||| |||||| |||    
T  44643473 tatgattcatatcggggaagaac-tgttgtatcctaggaggatatgcgcttatgaggcggatagaatctgaaggacagtgactatgtcacgcctcaggtt 44643571  T

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Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 2936257 - 2936141
Alignment:
Q  113 tgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtc 212  Q
    ||||||||||||| ||||| ||||||| ||||||||||| |||| |||  | ||||| || ||||||||||||||||||||||||||| ||||||| |||    
T  2936257 tgtcacctctgatgtgatttatatcagagaagaacatgtggtatcttgaaaagatatgcgcttatgaggcggataaatccttaaggacagtgacttcgtc 2936158  T
Q  213 atgcctcatgttatata 229  Q
    |  ||||||||||||||    
T  2936157 acacctcatgttatata 2936141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 3835800 - 3835677
Alignment:
Q  82 atctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgagg 181  Q
    ||||| |||||||| |||||||||||| || ||||||||||||||||||| ||||||| ||||||  ||||||||  ||  ||||||| || ||||||||    
T  3835800 atctcttgtgtttatcaaattcaagttgttctgtcacctctgatatgatttatatcagagaagaatttgttgtatcctgagaggatatgcgcttatgagg 3835701  T
Q  182 cggataaatccttaaggacggtga 205  Q
     | |||||||||||||||||||||    
T  3835700 tgaataaatccttaaggacggtga 3835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 24045017 - 24044926
Alignment:
Q  138 agggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    |||||||||||||||||||  ||  ||||||| || |||||||||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  24045017 agggaagaacatgttgtatcctgggaggatatgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttatata 24044926  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 14579611 - 14579714
Alignment:
Q  97 caaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaa 196  Q
    |||||||||||| || |||||||||| | ||||||||| |||| ||||||| ||||||||  ||  ||||||| || |||||||||||||||||||||||    
T  14579611 caaattcaagttgttctgtcacctcttacatgattcatgtcagagaagaacctgttgtatcctgagaggatattcgcttatgaggcggataaatccttaa 14579710  T
Q  197 ggac 200  Q
    ||||    
T  14579711 ggac 14579714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 82 - 236
Target Start/End: Original strand, 19973658 - 19973799
Alignment:
Q  82 atctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgagg 181  Q
    |||||||||||||| ||||||| |||| || ||||||||||||| ||||||||||||| ||||||| | | |             ||| || ||||||||    
T  19973658 atctcctgtgtttatcaaattcgagttgttctgtcacctctgatttgattcatatcagagaagaacctatcg-------------tatgcgcttatgagg 19973744  T
Q  182 cggataaatccttaaggacggtgactttgtcatgcctcatgttatatatttgttt 236  Q
    |||||||||| |||||||| |||||||||||| |||||| |||||| || |||||    
T  19973745 cggataaatctttaaggacagtgactttgtcacgcctcaggttatacatatgttt 19973799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 24041717 - 24041623
Alignment:
Q  135 atcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    ||||||||||||||||||||||  |   ||||||| || |||||||||| |||||| ||||| ||| |||||||||||| |||| ||||||||||    
T  24041717 atcagggaagaacatgttgtatcctaggaggatatgcgcttatgaggcgaataaattcttaaagacagtgactttgtcacgccttatgttatata 24041623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 19976076 - 19976140
Alignment:
Q  82 atctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaa 146  Q
    |||||||||| ||| ||||||| |||| || |||||||| | |||||||||||||||| ||||||    
T  19976076 atctcctgtggttatcaaattcgagttgttctgtcacctttaatatgattcatatcagagaagaa 19976140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 19697955 - 19697847
Alignment:
Q  113 tgtcacctctgat-atgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgactttg 210  Q
    ||||||||| ||| |||||||||| | ||||||||| ||||||||  ||  ||||||| || ||||||||||||| ||||||| ||||||  ||||| ||    
T  19697955 tgtcacctccgattatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacaatgactatg 19697857  T
Q  211 tcatgcctca 220  Q
    ||| ||||||    
T  19697856 tcacgcctca 19697847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 171 - 383
Target Start/End: Complemental strand, 41739934 - 41739716
Alignment:
Q  171 cgattatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttata------tatttgtttattattttgcaggttacatatgagttgt 264  Q
    |||||||||| ||||||||||||||||||  |||||||  ||| |||||| ||||||      ||  |||||| |||||||||||||| |||||||||||    
T  41739934 cgattatgagacggataaatccttaaggatagtgacttcatcacgcctcaggttataattacataactgtttactattttgcaggttagatatgagttgt 41739835  T
Q  265 tggtgaatgatattgatagagttatgtcagtactctagctatctaaaattattaaggacaaataaatttatcgatccttctcttttgcttatattcaatt 364  Q
    | |||||  ||||||||||||| ||||||| |  |||  |||  |||| ||||||| |||  ||| |  || || ||||||||||| |||||||| ||||    
T  41739834 tagtgaagaatattgatagagtcatgtcaggatcctaattatacaaaaatattaagaacaggtaagtccattgaaccttctcttttacttatatttaatt 41739735  T
Q  365 gatgtttatatggatatgt 383  Q
    | |||||||||||||||||    
T  41739734 gttgtttatatggatatgt 41739716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 33940490 - 33940435
Alignment:
Q  174 ttatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgttatata 229  Q
    ||||||| ||||||||||||||||||| ||||||| |||| |||||| ||||||||    
T  33940490 ttatgagacggataaatccttaaggacagtgacttcgtcaagcctcaggttatata 33940435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 1788996 - 1788901
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgactttgtcatgcctca 220  Q
    ||||||||||| | ||||||||| ||||||||  ||  ||||||| || ||||||||||||| ||||||| |||||| |||||| ||||| ||||||    
T  1788996 tatgattcataacggggaagaac-tgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 1788901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 252
Target Start/End: Original strand, 110116 - 110268
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaagg 198  Q
    |||| |||| || |||||||||||| |||||||||||||| ||||||| |||||||| |||  ||||||| || ||||||||||||| ||||||| ||||    
T  110116 attcgagttgttctgtcacctctgacatgattcatatcagcgaagaac-tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaagg 110214  T
Q  199 acggtgactttgtcatgcctcatgttatatatttgtttattattttgcaggtta 252  Q
    || |||||| ||||| ||||||||||| |||   | ||| ||||||||||||||    
T  110215 acagtgactatgtcacgcctcatgttagataacagattactattttgcaggtta 110268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 127695 - 127820
Alignment:
Q  100 attcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaagg 198  Q
    |||| |||| || |||||||||||| |||||||||||||||||||||| ||||||||  ||  ||||||| || || |||||||||| ||||||| ||||    
T  127695 attcgagttgttctgtcacctctgacatgattcatatcagggaagaac-tgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaagg 127793  T
Q  199 acggtgactttgtcatgcctcatgtta 225  Q
    || |||||| ||||| |||||| ||||    
T  127794 acagtgactatgtcacgcctcaggtta 127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 13291940 - 13292068
Alignment:
Q  92 tttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatc 191  Q
    |||| ||||||| |||| || | ||||||||||||||||||||||||| ||| ||| ||||||||  ||  ||||||| || ||||||||||||||||||    
T  13291940 tttatcaaattcgagttgttctatcacctctgatatgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcggataaatc 13292039  T
Q  192 cttaaggacggtgactttgtcatgcctca 220  Q
     |||||||| || |||| |||||||||||    
T  13292040 tttaaggacagtaacttcgtcatgcctca 13292068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 39292120 - 39292250
Alignment:
Q  126 atgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaa-tccttaaggacggtgactttgtcatgcctcatgtt 224  Q
    |||||||||| | | ||||||| ||||||||| ||  ||||||| || |||||||||||||||| ||||||||||| |||||| | |||  ||||| |||    
T  39292120 atgattcataacggagaagaac-tgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactatatcacacctcaggtt 39292218  T
Q  225 atatatttgtttattattttgcaggttacata 256  Q
    | ||| | ||||||| ||||||||||||||||    
T  39292219 agataatggtttattgttttgcaggttacata 39292250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 26703113 - 26703032
Alignment:
Q  127 tgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgact 207  Q
    ||||||||| ||| ||||||| |||||||| |||  ||||||| || ||||||||||||| ||||||| |||||| ||||||    
T  26703113 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgact 26703032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 26972846 - 26972765
Alignment:
Q  127 tgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggat-aaatccttaaggacggtgact 207  Q
    ||||||||| ||| ||||||| |||||||| |||  ||||||| || ||||||||||||| ||||||| |||||| ||||||    
T  26972846 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgact 26972765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 287
Target Start/End: Original strand, 18594835 - 18594995
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatcctt-aaggacggtgactttgtcatgcctcatgt 223  Q
    ||||||||||| | ||||||||| ||||||||  ||  || |||| || ||||||||||||||||  ||| |||||| |||||  ||||| |||||| ||    
T  18594835 tatgattcataacggggaagaac-tgttgtatcctgtgagaatatgcgcttatgaggcggataaaatcttcaaggacagtgacaatgtcacgcctcaggt 18594933  T
Q  224 tatatatttgtttattattttgcaggttacatatgagttgttggtgaatgatattgatagagtt 287  Q
    || ||| | || | || |||||||||||||  ||||||||||| |  | ||| |||||||||||    
T  18594934 tacataatagtattttgttttgcaggttac--atgagttgttgatagaagatgttgatagagtt 18594995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 448698 - 448809
Alignment:
Q  82 atctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgagg 181  Q
    |||||||||||||| || ||||||||| || |||||||| ||||||||||||||| |||   |||||||||||||   |  ||||||| |||||||||||    
T  448698 atctcctgtgtttatcagattcaagttgttttgtcacctttgatatgattcatattagg---gaacatgttgtatcccgagaggatatgcgattatgagg 448794  T
Q  182 cggataaatccttaa 196  Q
    | |||||||| ||||    
T  448795 cagataaatctttaa 448809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 12089 - 12164
Alignment:
Q  81 tatctcctgtgtttagcaaattcaagttcttatgtcacctctgatatgattcatatcagggaagaacatgttgtat 156  Q
    |||||| |||||||| || |||  |||| || |||||||||||||||||||||||| |||||||||| ||||||||    
T  12089 tatctcatgtgtttatcagattggagttgttctgtcacctctgatatgattcatataagggaagaacttgttgtat 12164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 5022 - 4950
Alignment:
Q  125 tatgattcatatcagggaagaacatgttgtattttgccaggatatacgattatgaggcggataaatccttaag 197  Q
    ||||||||||||||  ||||||| |||||||| |||  |||||||  | ||||||||| ||||||||||||||    
T  5022 tatgattcatatcatagaagaacctgttgtatcttgggaggatatgtgcttatgaggcagataaatccttaag 4950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 813 - 863
Alignment:
Q  174 ttatgaggcggataaatccttaaggacggtgactttgtcatgcctcatgtt 224  Q
    |||||||||||| |||| | ||||||| |||||||||||| ||||||||||    
T  813 ttatgaggcggaaaaatacctaaggacagtgactttgtcacgcctcatgtt 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 1147 - 1111
Alignment:
Q  120 tctgatatgattcatatcagggaagaacatgttgtat 156  Q
    |||||| |||||||||| |||||||||||||||||||    
T  1147 tctgatgtgattcatattagggaagaacatgttgtat 1111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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