View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_high_9 (Length: 573)
Name: NF17596_high_9
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 834700 - 834144
Alignment:
| Q |
1 |
gaccctgcagcaagtttatgtctctcccattgattctttcaatgaaggtaaaatcttttttgcattgaatttcagaat---aacggatatgctcctttcg |
97 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
834700 |
gaccctgcagcaaatttatgtctctcccattgattctttcaatgaaggtaaaatcttttttgcattgaatttcagaattataacggatatgctccttttg |
834601 |
T |
|
| Q |
98 |
ctcttccgataactcatttttagatgaagaaacatccacagtttcatcatttaacaataattcagtatcagactgcttgctttctttcagatatt---ta |
194 |
Q |
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| T |
834600 |
ctcttccgataactcatttttagatgaagaaacatccacagttccatcatttaacaataattcagtatcagactgcttgctttctttcagatattattta |
834501 |
T |
|
| Q |
195 |
attgaagaatcaaaattgggtttgttatccttcactgtgagagtagaatcatgtttttgtaaagagttccttggattgtacactattctaattcttttat |
294 |
Q |
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| T |
834500 |
attgaagaatcaaaattgggtttgttatccttcactgtgagagtagaatcatgtttttgtaaagagttccttggattgtacactattctaattcttttat |
834401 |
T |
|
| Q |
295 |
tcaaagattttgcaagtgaagcattgccattcatgtgcattgctcctccaatatctttcaagtctccaccgggatacaaattctcaccgtgttttcctac |
394 |
Q |
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| T |
834400 |
tcaaagattttgcaagtgaagcattgccattcatgtgtattgctcctccaatatctttcaagtctccaccgggatacaaattctcaccgtgttttcctac |
834301 |
T |
|
| Q |
395 |
attctcatcgagagtagaatcatgttttagtgaagagtttattggactcttcccctcttttctaactcttgtattcaaagattctgaatttgaacttgaa |
494 |
Q |
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| T |
834300 |
attctcatcgagagtagaatcatgttttagtgaagagtttattggactcttccccttttttctaactcttgtattcaaagattctgaattt------gaa |
834207 |
T |
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| Q |
495 |
ccgttaccattcatagacatgtatatttcatctccaatatcttcccattcttcaccatgatac |
557 |
Q |
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| T |
834206 |
ccgttaccattcatagacatgtatatttcatctccaatatcttcccatccttcaccatgatac |
834144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 812791 - 812742
Alignment:
| Q |
440 |
actcttcccctcttttctaactcttgtattcaaagattctgaatttgaac |
489 |
Q |
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| T |
812791 |
actcttcccctcttttctaatccttttattccaagattctgaaattgaac |
812742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 34881692 - 34881743
Alignment:
| Q |
216 |
ttgttatccttcactgtgagagtagaatcatgtttttgtaaagagttccttg |
267 |
Q |
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| T |
34881692 |
ttgttatccttcattgtgagaatagaatcatgtttttgtatagagtttcttg |
34881743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 488
Target Start/End: Original strand, 34881709 - 34881793
Alignment:
| Q |
404 |
gagagtagaatcatgttttagtgaagagtttattggactcttcccctcttttctaactcttgtattcaaagattctgaatttgaa |
488 |
Q |
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|||| |||||||||||||| || ||||||| ||| || |||| ||||||| ||| |||| |||||| |||||||||| ||||| |
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| T |
34881709 |
gagaatagaatcatgtttttgtatagagtttcttgaacccttcgactcttttataattcttttattcagagattctgaaattgaa |
34881793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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