View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_1 (Length: 778)

Name: NF17596_low_1
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_1
NF17596_low_1
[»] chr7 (1 HSPs)
chr7 (4-760)||(13308124-13308879)


Alignment Details
Target: chr7 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 4 - 760
Target Start/End: Complemental strand, 13308879 - 13308124
Alignment:
Q  4 gcatgtcgaagaatatggaagcgtgaaagttcaagaaatctcacatttgacaacggagaaaatcagagtactttgtgtggcgatgaagcgtggaagccat 103  Q
    ||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13308879 gcatgtctaacaatatggaagcgtgaaagttcaaggaatctcacatttgacaacggagaaaaccagagtactttgtgtggcgatgaagcgtggaagccat 13308780  T
Q  104 gccttaaggacattcaccctgtttgtttgctcgcttttcgagttatctcattctcttctcttttggcatcactaattgccaaaatccatgtcagtcatgg 203  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13308779 gccttaaggacattcaccctgtttgtttgctagtttttcgagttatctcattctcttctcttttggcatcactaattgccaaaatccatgtcagtcatgg 13308680  T
Q  204 cacaacattttactattacactcagtgagtatttctcttttgttatcctcatgtacttgatttatttatgggtcttgtcatgcttagtgcggtgccatag 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13308679 cacaacattttactattacactcagtgagtatttctcttttgttatcctcatgtacttgatttatttatgggtcttgtcatgcttagtgcggtgccatag 13308580  T
Q  304 atttggtgagctaattgttatttttcttagttggtgatttaaagatgtactagtgaaccaccattaccttggtcatagtggaactgaatttggatccctt 403  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13308579 atttggtgagctaatcgttatttttcttagttggtgatttaaagatttactagtgaaccaccattaccttggtcatagtggaactgaatttggatccctt 13308480  T
Q  404 aagcatagtctcgggttcaattcttgtaggtggaaaatacatggttggcaagggcggcctcactaaaggtggccagtctcgttctctgaccgagattagt 503  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13308479 aagcatagtctcgggttcaattcttgtagatggaaaatacatggttggcaagggaggcctcactaaaggtggccagtctcgttctctgaccgagattagt 13308380  T
Q  504 aatcggcgaagccgttggatactttaaacagtgatatggttaccaacaaaaataaattcttctcctttaagcattataattgaatccaaatctatttaga 603  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13308379 aatcggcgaagccggtggatactttaaacagtgatatggttaccaacaaaaataaattcttctcctttaagcattataattgaatccaaatctatttaga 13308280  T
Q  604 atttttaagctgtcttagtgtttctcagtttcgtttcaatgacttccatttctctgacatttgtttcaaacttttggtttcaannnnnnngccatttgat 703  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  13308279 atttttaagctgtcttagtttttctcagtttcgtttcaatgacttccatttctctgacatttgtttcaaacttttggtttcaatttttttgccatttgat 13308180  T
Q  704 tgataaattttgattgtgaactcctcttattttggatttcttctaggtggaccttca 760  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13308179 tgataaattttgattgtgaact-ctcttattttggatttcttctaggtggaccttca 13308124  T

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