View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17596_low_12 (Length: 531)
Name: NF17596_low_12
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 101 - 515
Target Start/End: Original strand, 16292422 - 16292832
Alignment:
| Q |
101 |
gtaatatttatgcttattcttttagaaccatttagataattgtaattattttgggtcgggtgatgttttttctcatgaagctgaaagtaagtgaacctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16292422 |
gtaatatttatgcttattcttttagaaccatttagataattgtaattattttgggtggggtgctgttttttctcatgaagctgaaagtaagtgaacttgc |
16292521 |
T |
|
| Q |
201 |
atcttttgtgagtgcatctgatgtaactagaaaagaagaaaaagcaaagacataaattatgctcaaatttgaagggtcattagttgaacatagaatgcta |
300 |
Q |
| |
|
| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16292522 |
acctgttgtgagtgcatccgatgtaactagaaaagaagaaaaagcaaagacataaattatgctcaaatttgaagggtcattagttgaacatagaatgcta |
16292621 |
T |
|
| Q |
301 |
agattttgtatcactttgatgagttctattttgctaatgtttatgttgtatttgagttgtatatcgtgatgatatatagtaagttgtttttggtcaaatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16292622 |
agattttgtatcactttgatgagttctattttgctaatgtttatgttgtctttgagttgtatatcgtgatg----atagtaagttgtttttggtcaaatt |
16292717 |
T |
|
| Q |
401 |
agaaagtattttggagtttaaggtgaatgtatgtgtccaagcttcccactctattgttactcattgatgtcgcgaccattttaaagaaaattagacaaag |
500 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16292718 |
aaaaggtattttggagtttaaggtgaatgtatgtgtccaagcttcccactctattgttactcgttgatgtcgcgaccattttaaagaaaattagacaaag |
16292817 |
T |
|
| Q |
501 |
atggagactaaattg |
515 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
16292818 |
atagagactaaattg |
16292832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 37576838 - 37577001
Alignment:
| Q |
91 |
gattaattttgtaatatttatgcttattcttttagaaccatttagataattgtaattattttgggtcgggtgatgttttttctcatgaagctgaaagtaa |
190 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||| | ||||||||||||||||||| |
|
|
| T |
37576838 |
gattaaattcgtaatatttatgcttattcttttagaaccatttagatggttttaattattttgggt-ggatgatgtttctcctcatgaagctgaaagtaa |
37576936 |
T |
|
| Q |
191 |
gtgaacctgcatcttttgtgagtgcatctgatgtaactagaaaagaagaaaaagcaaagacataa |
255 |
Q |
| |
|
||||||||||| || ||||||||||||| |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
37576937 |
gtgaacctgcacctgttgtgagtgcatccgatgcaactagaaaagaagaaaaaacaaagacataa |
37577001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 33149100 - 33149199
Alignment:
| Q |
91 |
gattaattttgtaatatttatgcttattcttttagaaccatttagataattgtaattattttgggtcgggtgatgttttttctcatgaagctgaaagtaa |
190 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||| | ||||||||||||||||||| |
|
|
| T |
33149100 |
gattaaatttgtaatatttatgcttattcttttagaaccatttagatgattttaattattttgggt-ggatgatgtttctcctcatgaagctgaaagtaa |
33149198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 361
Target Start/End: Complemental strand, 38395555 - 38395372
Alignment:
| Q |
184 |
aaagtaagtgaacctgcatcttttgtgagtgcatctgatgtaactagaaaagaagaaaaagcaaagacataaattatgctcaaatttgaagggtcattag |
283 |
Q |
| |
|
|||||||||||| ||| |||| ||||||| ||| ||| || || ||||||||| |||||| ||| | || | |||||||||| |||||| || |||| |
|
|
| T |
38395555 |
aaagtaagtgaatctgtatctattgtgagcgcaactggtgcaattagaaaagacgaaaaaacaatgtcaaaggttatgctcaactttgaatgggttttag |
38395456 |
T |
|
| Q |
284 |
ttgaacatagaatgctaagatttt------gtatcactttgatgagttctattttgctaatgtttatgttgtatttgagttgta |
361 |
Q |
| |
|
|||||| |||||||| |||||||| || | ||||||| | || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
38395455 |
ttgaacttagaatgccaagattttgtgttagtgttactttgacggattttattttgctaatttttatgttgtatttgagttgta |
38395372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University