View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17596_low_14 (Length: 503)
Name: NF17596_low_14
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 295 - 420
Target Start/End: Complemental strand, 21942698 - 21942573
Alignment:
| Q |
295 |
atctttcacggatggtcgatcggatgatctgcttttagtgcaaagcatagcaacctcaagaaccagtttaatctcttgcattgtactatcagaagccact |
394 |
Q |
| |
|
||||| || |||||| ||||| |||||||||||||||||||||| ||||| ||| |||||||||| |||||||||||| |||||||| ||||||||||| |
|
|
| T |
21942698 |
atcttccatggatgggcgatccgatgatctgcttttagtgcaaatcatagaaacttcaagaaccattttaatctcttggattgtacttgcagaagccact |
21942599 |
T |
|
| Q |
395 |
ttattaccattgcaatcttctcttag |
420 |
Q |
| |
|
| ||||||||||||| |||||||||| |
|
|
| T |
21942598 |
tcattaccattgcaaacttctcttag |
21942573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 422
Target Start/End: Original strand, 10799483 - 10799610
Alignment:
| Q |
295 |
atctttcacggatggtcgatcggatgatctgcttttagtgcaaagcatagcaacctcaagaaccagtttaatctcttgcattgtactatcagaagccact |
394 |
Q |
| |
|
||||| || |||||| ||||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| | |||| |
|
|
| T |
10799483 |
atcttccatggatggccgatccgatgatctgcttctggtgcaaagcatagcaacctcaagaaccaatttaatctcttccattgaactggcagaggtcact |
10799582 |
T |
|
| Q |
395 |
ttattaccattgcaatcttctcttagaa |
422 |
Q |
| |
|
| ||| ||||| || |||||||||||| |
|
|
| T |
10799583 |
tcattgtcattgtaaacttctcttagaa |
10799610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 20220198 - 20220254
Alignment:
| Q |
7 |
taagaaacttaattgattttaggtt-gtatatttgtaacgtgttgtttcttaaatat |
62 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
20220198 |
taagaaacttaattgattttaggtttgtatatttgtaacgtgttgtttctcaaatat |
20220254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 485
Target Start/End: Complemental strand, 21942464 - 21942404
Alignment:
| Q |
424 |
ttcctctttcattgcttcattgtgttctgccattaaaaataaatctaaaattagtgtcgata |
485 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
21942464 |
ttcctctttaattgcttcattgtattctgc-attaaaaataaatctaaaatcagtgttgata |
21942404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 37621659 - 37621598
Alignment:
| Q |
68 |
aaggaatatctattctaggaaattagaggaagactagaatttcatttcagaattatttctta |
129 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37621659 |
aaggaatatctctcctaagaaattagaggaagactagaatttcatttctgaattatttctta |
37621598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 39988020 - 39988067
Alignment:
| Q |
68 |
aaggaatatctattctaggaaattagaggaagactagaatttcatttc |
115 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
39988020 |
aaggaatatctctcctaagaaattagaggaagactagaatttcatttc |
39988067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University