View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_15 (Length: 500)
Name: NF17596_low_15
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_15 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Original strand, 11796856 - 11797312
Alignment:
| Q |
19 |
gtctattatataaataaaatttataacttagaaacatgtgattcaatccctcnnnnnnnnnnnnnnnnntgtgattcaaatttatacactcattgttcta |
118 |
Q |
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| T |
11796856 |
gtctattatataaataaaatttataacttagaaacatgtgattcaatccctcaaaaacaa---------tgtgattcaaatttatacactcattgttcta |
11796946 |
T |
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| Q |
119 |
taaaagtattcttcattgtaccttaaaaaaggggtcacattattttcaagtaaagaaagggttcaacactcttgcacaaccacctttataataagaagga |
218 |
Q |
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| T |
11796947 |
taaaagtattcttcattgtaccttaaaagaggggtcacattattttcaagtaaagaaagggttcaacactcttgcacaaccacccttataataag---ga |
11797043 |
T |
|
| Q |
219 |
cagatcaataagcaagttgaattgggtgacttttgtggctcaagaagtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttgg |
318 |
Q |
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| T |
11797044 |
cagatcaataagcaagttgaattgtgtgacttttgtggctcaagaagtaatgaatacataaacgcaaaaaaactcattttcattgaagaagaaaatttgg |
11797143 |
T |
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| Q |
319 |
ttcaatggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaa |
418 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||||||||| |
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| T |
11797144 |
ttcaatggaggaatacaatgacgttttgttagaagctcaattaactgatcttgtagatggtgctgttgattatagagggcaacctgcaatcagatccaaa |
11797243 |
T |
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| Q |
419 |
tctggttattggcgatccgcttggtttatcataggtactatttgagccatttatcttgaatcctttgct |
487 |
Q |
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| T |
11797244 |
tctggttattggcgatccgcttggtttatcataggtactacttgagccatttatcttgaatcctttgct |
11797312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 243 - 456
Target Start/End: Original strand, 11778498 - 11778710
Alignment:
| Q |
243 |
ggtgacttttgtggctcaagaagtaatgaatacataaacgcnnnnnnnctcattttcattgaagaagaaaatttggttcaatggaggaatacaatgaagt |
342 |
Q |
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| T |
11778498 |
ggtgacttttatggaccaagaagtaatgaatacataaacgcaaacaa-ctcattttgattgaagaagaaaatttggttcgatggaagaatacaatgatgt |
11778596 |
T |
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| Q |
343 |
tttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctggttattggcgatccgcttgg |
442 |
Q |
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| T |
11778597 |
tttgttagatgctaaattagctgatcttgtagatggtgctgttgattatagaggacaacctgccatcagatccaaatctggttattggctatccgcttgg |
11778696 |
T |
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| Q |
443 |
tttatcataggtac |
456 |
Q |
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| T |
11778697 |
tttatcataggtac |
11778710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 455
Target Start/End: Original strand, 11701497 - 11701626
Alignment:
| Q |
323 |
atggaggaatacaatgaagttttggtagaagctcaattaactgatcttgtagatggtgctgttgattatacaggacaacctgcgattagatccaaatctg |
422 |
Q |
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||||| |||| ||||||||| ||| |||||||||||||| || ||||| ||||| |||||||| || | ||||| ||||| |||| | ||||||| |
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| T |
11701497 |
atggaagaatccaatgaagtgttgttagaagctcaattatct---cttgttgatggcgctgttgactacaatggacagcctgcagttaggtttaaatctg |
11701593 |
T |
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| Q |
423 |
gttattggcgatccgcttggtttatcataggta |
455 |
Q |
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| T |
11701594 |
gttattggagatccgcttggtttatcataggta |
11701626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 457
Target Start/End: Original strand, 11695776 - 11695839
Alignment:
| Q |
394 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtact |
457 |
Q |
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| T |
11695776 |
aggacaacctgccgttagatccaaaactggctattggagatccgcttggtttatcataggtact |
11695839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 11675245 - 11675293
Alignment:
| Q |
408 |
ttagatccaaatctggttattggcgatccgcttggtttatcataggtac |
456 |
Q |
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| T |
11675245 |
ttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11675293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 11683524 - 11683572
Alignment:
| Q |
408 |
ttagatccaaatctggttattggcgatccgcttggtttatcataggtac |
456 |
Q |
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| T |
11683524 |
ttaggtccaaaactggttattggagatccgcttggtttatcattggtac |
11683572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 11778199 - 11778307
Alignment:
| Q |
88 |
tgtgattcaaatttatacactcattgttct----ataaaagtattcttcattgtaccttaaaaaaggggtcacattattttcaagtaaagaaagggttca |
183 |
Q |
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||||||||| |||| |||||||||||||| |||||||||| ||||||| ||||||| |||| |||||||||||||| |||| || | ||||| |
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| T |
11778199 |
tgtgattcagatttgcacactcattgttctataaataaaagtatccttcattataccttagaaaa--aatcacattattttcatttaaaaaatgagttca |
11778296 |
T |
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| Q |
184 |
acactcttgca |
194 |
Q |
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| T |
11778297 |
acactcttgca |
11778307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 15852 - 15914
Alignment:
| Q |
394 |
aggacaacctgcgattagatccaaatctggttattggcgatccgcttggtttatcataggtac |
456 |
Q |
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| T |
15852 |
aggacaacctgccgttaggtccaaatctggttactggagatccgcttggtttatcataggtac |
15914 |
T |
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