View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_16 (Length: 488)
Name: NF17596_low_16
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 43077436 - 43077895
Alignment:
| Q |
17 |
acatcacattcaaagtaagtaacaaaacaagcctcatttctatgtttgtgttgttacaagaaaattaagactgtgtgtgta--------tgtatacagaa |
108 |
Q |
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| T |
43077436 |
acatcacattcaaagtaagtaacaaaacaagcctcatttctatgtttgtgttgttacaagaaaattaagactgtgagtgtatgtatgtatgtatacagaa |
43077535 |
T |
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| Q |
109 |
tactgctccaattcctaaaccaggagcagttggaaaacaaggagtggcattgagaatttcagctgatactgctatgttccttggctgcaaattcttaggg |
208 |
Q |
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| T |
43077536 |
tactgctccaattcctaaaccaggagcagttggaaaacaaggagtggcattgagaatttcagctgatactgctatgttccttggctgcaaattcttaggg |
43077635 |
T |
|
| Q |
209 |
gcacaggacacactgtatgatcatattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctctctcttt |
308 |
Q |
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| T |
43077636 |
gcacaggacacactgtatgatcatattggtaggcactattataaagattgttatattgaaggctctgttgatttcatatttggcaatgctctctctcttt |
43077735 |
T |
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| Q |
309 |
ttgaggtaattaattagtttcattttcattttcaagatgaaatcgttct-aaaatttgactaatgaagttggtaataacatatataggggtgtcacgtgc |
407 |
Q |
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| T |
43077736 |
ttgaggtaattaattagtttcattttcattttcaagatgaaatcgttctaaaaatttgactaatgaagttggtaataac----ataggggtgtcacgtgc |
43077831 |
T |
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| Q |
408 |
atgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
471 |
Q |
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| T |
43077832 |
atgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacac |
43077895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 131 - 315
Target Start/End: Complemental strand, 33965445 - 33965261
Alignment:
| Q |
131 |
ggagcagttggaaaacaaggagtggcattgagaatttcagctgatactgctatgttccttggctgcaaattcttaggggcacaggacacactgtatgatc |
230 |
Q |
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| T |
33965445 |
ggagcaattggaaaacaagcagtagcatttagaatttcagcagacacagcatcattcttagggtgtagatttttgggagcacaagatacactttatgatc |
33965346 |
T |
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| Q |
231 |
atattggtaggcactattacaaagattgttatattgaaggctcagttgatttcatatttggcaatgctctctctctttttgaggt |
315 |
Q |
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| T |
33965345 |
atattggtagacattactataaagattgttacattgaaggttctgttgatttcatatttggcaatgctctttctctatttgaggt |
33965261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 33964273 - 33964188
Alignment:
| Q |
391 |
ataggggtgtcacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaaggaacagtttattagaagacacaggtt |
476 |
Q |
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| T |
33964273 |
atagggatgtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaaggagcagtatgttacaagacacaggtt |
33964188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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