View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_17 (Length: 487)
Name: NF17596_low_17
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_17 |
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| [»] scaffold0250 (1 HSPs) |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0250 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 54 - 470
Target Start/End: Complemental strand, 14897 - 14472
Alignment:
| Q |
54 |
tgatattaagg-agatgcattagttagggttatgcataaggaaaggcctaagctaattatgccaaataatcatattacaaacaaaaatgcatttatctgc |
152 |
Q |
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| T |
14897 |
tgatattaagggagatgcattagttagggttatgcataaggaaaggcctaagccaattatgccaaataatcatattacaaacaaaaatgcatttatctgc |
14798 |
T |
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| Q |
153 |
caat--------atacaatcaattttcttttgaaaagttaaactaacacatcgaaattggcaacgagaagaatcgaacctaatacctcactcaatggtct |
244 |
Q |
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| T |
14797 |
caatctgccagtatacaatcaatttccttttgaaaagttaaattaacacatcgaaattggcaacgaggagaatcgaacctaatacctcattcaatggtct |
14698 |
T |
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| Q |
245 |
caacccaacaccaccagactaaaccgccaagtgggttaatatataattatttgatacatcattggacttcagataagatatttaagactttgtggatgac |
344 |
Q |
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| T |
14697 |
caaaccaacaccaccagactaaaccgccaaatgggttaatatataattatttgatacatcattggacttcagataagatatttaagactttgtggatgac |
14598 |
T |
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| Q |
345 |
aaatactataatttgttgctgaaacattatattttacgaacaatttatttaaaatgttcttgttgatgttatgaaatgtttaggagggagttactgaaat |
444 |
Q |
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| T |
14597 |
aaatactgtaatttgttgctgaaacattatattttacgaacaatttatttaaaatgttcttgttgatgttatgaaatgtttaggagggagttactgaaat |
14498 |
T |
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| Q |
445 |
caaagctactttcaaaggacatgtct |
470 |
Q |
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| T |
14497 |
caaagctactctcaaaggacatgtct |
14472 |
T |
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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 29241085 - 29241017
Alignment:
| Q |
359 |
gttgctgaaacattatattttacgaacaatttatttaaaatgttcttgttgatgttatgaaatgtttag |
427 |
Q |
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| T |
29241085 |
gttgctgaaaaattacattttaggaacaatttatttaaaatgttctcattgatgttatgaaatgtttag |
29241017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 183145 - 183105
Alignment:
| Q |
106 |
taattatgccaaataatcatattacaaacaaaaatgcattt |
146 |
Q |
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| T |
183145 |
taattatgccaaaaattcatattacaaacaaaaatacattt |
183105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 221030 - 220990
Alignment:
| Q |
106 |
taattatgccaaataatcatattacaaacaaaaatgcattt |
146 |
Q |
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| T |
221030 |
taattatgccaaaaattcatattacaaacaaaaatacattt |
220990 |
T |
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