View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_18 (Length: 451)

Name: NF17596_low_18
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_18
NF17596_low_18
[»] chr4 (12 HSPs)
chr4 (14-436)||(24703140-24703560)
chr4 (17-227)||(5609530-5609739)
chr4 (17-227)||(418397-418605)
chr4 (127-226)||(11673952-11674051)
chr4 (17-228)||(30819796-30820005)
chr4 (126-204)||(36559308-36559386)
chr4 (30-227)||(54452020-54452217)
chr4 (14-95)||(13610511-13610592)
chr4 (141-222)||(13610704-13610785)
chr4 (14-100)||(2506375-2506461)
chr4 (33-91)||(14345683-14345741)
chr4 (14-69)||(36559438-36559493)
[»] chr7 (8 HSPs)
chr7 (17-227)||(8226974-8227183)
chr7 (40-227)||(19756384-19756571)
chr7 (141-222)||(9626461-9626542)
chr7 (14-95)||(9626654-9626735)
chr7 (33-229)||(49113476-49113670)
chr7 (30-85)||(39782255-39782310)
chr7 (163-227)||(24822098-24822162)
chr7 (171-217)||(29722000-29722046)
[»] chr1 (9 HSPs)
chr1 (17-227)||(45931499-45931708)
chr1 (140-223)||(24029787-24029870)
chr1 (17-227)||(46239888-46240096)
chr1 (30-227)||(9154388-9154586)
chr1 (14-95)||(52361521-52361602)
chr1 (14-204)||(45199877-45200066)
chr1 (17-87)||(24029665-24029735)
chr1 (11-112)||(3680386-3680487)
chr1 (163-206)||(42824707-42824750)
[»] chr5 (15 HSPs)
chr5 (134-227)||(14197667-14197760)
chr5 (17-227)||(19964988-19965197)
chr5 (17-226)||(10365192-10365399)
chr5 (17-230)||(38477474-38477685)
chr5 (142-229)||(42550255-42550342)
chr5 (140-229)||(9270325-9270414)
chr5 (30-226)||(14463535-14463730)
chr5 (140-227)||(9043266-9043353)
chr5 (134-204)||(9822627-9822697)
chr5 (152-227)||(5711770-5711845)
chr5 (17-84)||(9822510-9822577)
chr5 (17-86)||(9270471-9270540)
chr5 (140-204)||(8931717-8931781)
chr5 (17-85)||(8931809-8931877)
chr5 (16-84)||(9043409-9043477)
[»] chr2 (10 HSPs)
chr2 (123-227)||(8861874-8861978)
chr2 (134-229)||(5377535-5377630)
chr2 (134-226)||(43325332-43325424)
chr2 (24-229)||(31465220-31465428)
chr2 (125-227)||(43317695-43317797)
chr2 (14-85)||(8861987-8862058)
chr2 (140-227)||(35060388-35060476)
chr2 (33-91)||(35060320-35060378)
chr2 (17-87)||(5377417-5377487)
chr2 (33-87)||(43325251-43325305)
[»] chr6 (13 HSPs)
chr6 (33-227)||(26860082-26860275)
chr6 (33-100)||(29208485-29208552)
chr6 (33-112)||(27111097-27111176)
chr6 (33-112)||(27152891-27152970)
chr6 (134-221)||(19686598-19686684)
chr6 (164-227)||(29208367-29208430)
chr6 (30-112)||(17004114-17004196)
chr6 (163-227)||(15917630-15917694)
chr6 (34-77)||(19686508-19686551)
chr6 (163-229)||(27110981-27111047)
chr6 (163-229)||(27152778-27152844)
chr6 (133-217)||(13610489-13610571)
chr6 (163-224)||(17003994-17004055)
[»] chr8 (10 HSPs)
chr8 (16-228)||(24040941-24041156)
chr8 (14-223)||(39317316-39317521)
chr8 (33-227)||(12806272-12806472)
chr8 (30-112)||(30884335-30884417)
chr8 (17-87)||(35976856-35976926)
chr8 (38-91)||(8549477-8549530)
chr8 (140-224)||(8549341-8549424)
chr8 (182-226)||(30884211-30884255)
chr8 (134-193)||(35976972-35977031)
chr8 (14-79)||(43855657-43855722)
[»] scaffold1432 (2 HSPs)
scaffold1432 (134-224)||(96-186)
scaffold1432 (38-84)||(1-47)
[»] chr3 (13 HSPs)
chr3 (14-227)||(32311594-32311798)
chr3 (51-227)||(43366109-43366283)
chr3 (17-112)||(52746826-52746921)
chr3 (14-87)||(8735862-8735935)
chr3 (14-87)||(9088103-9088176)
chr3 (30-224)||(15510657-15510853)
chr3 (132-223)||(8735977-8736068)
chr3 (132-223)||(9088218-9088309)
chr3 (140-227)||(24912569-24912655)
chr3 (170-229)||(5629219-5629278)
chr3 (40-91)||(24912470-24912521)
chr3 (140-204)||(10054724-10054787)
chr3 (132-204)||(35649654-35649725)
[»] scaffold0122 (2 HSPs)
scaffold0122 (140-227)||(11644-11731)
scaffold0122 (33-91)||(12899-12957)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 436
Target Start/End: Original strand, 24703140 - 24703560
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggatt 113  Q
    |||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||     
T  24703140 ataatacactttgatttatgaatcggatggattatccatccaataaaatttaataatggatggattggatggacataatacttaatggatggattggatg 24703239  T
Q  114 annnnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatcca 213  Q
             |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| | || |||||||||| |||||    
T  24703240 gttttttttaacaaaaa-aaaatagtggattgtaatggactaatggaccttttttgatccatccattaagatccaaattcataaccatccaatccatcca 24703338  T
Q  214 ttttgccacccctactgttatgtgacctgtgtctaccatattatggttaataagtgcattccatgtaatttgttaatattatgaaataattttcatataa 313  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  24703339 ttttgccacccctattgttatgtgacctgtgtctaccatatt-tggttaataagtgcgttccatgtaatttcttaatattatgaaataattttcatataa 24703437  T
Q  314 tagttgtgtagttacgtgagat-gttgttgttaaatgttttcccgttgttgtatatcctatgcgacattatttagaaaccaagtgaaattatcgaacact 412  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24703438 tagttgtgtagttacgtgagatggttgttgttaaatgttttcccgttgttgtatatcctatgcgacattatttagaaaccaagtg-aattatcgaacact 24703536  T
Q  413 ttgaatgaatcattgtaacaacat 436  Q
    ||||||||||||||||||||||||    
T  24703537 ttgaatgaatcattgtaacaacat 24703560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 5609739 - 5609530
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | || || | || | ||| ||||| |      
T  5609739 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattttaattggatggactggatgatt 5609640  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
          || ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| ||    
T  5609639 ttttttaagaaaaa-aaaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaatccatccactt 5609541  T
Q  217 tgccaccccta 227  Q
    |||||||||||    
T  5609540 tgccaccccta 5609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 418605 - 418397
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| |||||        
T  418605 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactggatggtt 418506  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
          || ||||| ||||||| ||||||||||  |||| |||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| ||    
T  418505 ttttttaagaaaaa-aaaatagtggattgtaataaactaatggaccttttttgatccatccattaggatccaaatccatatccatccaatcaatcca-tt 418408  T
Q  217 tgccaccccta 227  Q
    |||||||||||    
T  418407 tgccaccccta 418397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 11674051 - 11673952
Alignment:
Q  127 aaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccct 226  Q
    |||| ||||||| |||||||| ||||||| ||||||||||| |||||||||||||  |||||||||  ||||||||||||| ||||||||||||||||||    
T  11674051 aaaaaaaaatagtggattgtattggactaatggacctttttagatccatccattaggatccaaatctatatccatccaatccatccattttgccacccct 11673952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 30819796 - 30820005
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| | ||| |      
T  30819796 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatgatt 30819895  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
           |  |||| ||||||  |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||  ||||| ||    
T  30819896 tttttttaagaaaa-aaaataatggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaattcatcca-tt 30819993  T
Q  217 tgccacccctac 228  Q
     |||||||||||    
T  30819994 cgccacccctac 30820005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 36559386 - 36559308
Alignment:
Q  126 aaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatcca 204  Q
    ||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||    
T  36559386 aaaaaaaaaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatcca 36559308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 54452217 - 54452020
Alignment:
Q  30 aacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat-tannnnnnnnaacaaa 128  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |  ||||| | |||||||||             ||||    
T  54452217 aacggatcggatggataatccatccatttaaatttaataatggatggattggatggacataaaacctaatggatggattggatggtttttttttttcaaa 54452118  T
Q  129 aacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    || ||| | | ||||| ||||||| || ||||  ||||||| |||||||||||  |||||||||| ||||||||||||| |||||||||||||||||||    
T  54452117 aaaaaattggtggattttaatggattaatgga-tttttttggtccatccattaggatccaaatccatatccatccaatccatccattttgccaccccta 54452020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 13610511 - 13610592
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatt 95  Q
    |||||||||||||||| | |||||||||| |||||   ||||||||||| |||||||||||||||||||||||||| |||||    
T  13610511 ataatacactttgatttaaggatcggatgaattattcttccaataaaatctaataatggatggattggatggacatgatatt 13610592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 13610704 - 13610785
Alignment:
Q  141 gattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccac 222  Q
    ||||||||||||| | || ||||||||| ||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  13610704 gattgtaatggaccaatgaacctttttttatcaatccattaagatccaaatccatatccatccaatccatccattttgccac 13610785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 2506461 - 2506375
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatg 100  Q
    |||||||||||||||| | ||||| |||| |||||| |||||||||||  |||||||| |||||||| ||| |||||||| ||||||    
T  2506461 ataatacactttgatttatggatctgatgaattatccatccaataaaacctaataatgaatggattgtatgaacataatacttaatg 2506375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 14345741 - 14345683
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataa 91  Q
    |||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||    
T  14345741 ggatgggatggataatccatccattaaaatttaataatggatggattggatggacataa 14345683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 36559493 - 36559438
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataa 69  Q
    |||||||||||||||| | ||||| ||||||||||| ||||| |||||| ||||||    
T  36559493 ataatacactttgatttatggatcagatggattatccatccattaaaatctaataa 36559438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 8226974 - 8227183
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||| ||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| |||||        
T  8226974 atacactttgatttatggatcgggtggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactggatggtt 8227073  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
          || ||||| | ||||| |||||||||||||||| || ||||||||||||||||||||||  |||||||||| ||||||||||||| ||||||||    
T  8227074 ttttttaagaaaaa-agaatagtggattgtaatggactaatgaaccttttttgatccatccattaggatccaaatccatatccatccaatccatccattt 8227172  T
Q  217 tgccaccccta 227  Q
    |||||||||||    
T  8227173 tgccaccccta 8227183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 19756384 - 19756571
Alignment:
Q  40 atggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattannnnnnnnaacaaaaacaaaataga 139  Q
    |||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | |||||||||          ||  |||| |||||||     
T  19756384 atggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggattggatggttttttttaaggaaaaaaaaatagt 19756483  T
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    |||||||||||||||| ||||||||| |||||||||||||||  |||||||||  ||| ||||||||| |||||||||||||||||||    
T  19756484 ggattgtaatggactaatggacctttcttgatccatccattaggatccaaatctatatacatccaatccatccattttgccaccccta 19756571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 9626542 - 9626461
Alignment:
Q  141 gattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccac 222  Q
    ||||||||||||| | || ||||||||| ||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  9626542 gattgtaatggaccaatgaacctttttttatcaatccattaagatccaaatccatatccatccaatccatccattttgccac 9626461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 9626735 - 9626654
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatt 95  Q
    |||||||||||||||| | |||||||||| |||||   ||||||||||| |||||||||||||||||||||||||| |||||    
T  9626735 ataatacactttgatttaaggatcggatgaattattcttccaataaaatctaataatggatggattggatggacatgatatt 9626654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 49113670 - 49113476
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattannnnnnnnaacaaaaaca 132  Q
    ||||| ||||||||||| ||| | |||||  ||||||||||||| |||||| ||||||||| |||||| | ||||| |||          |||||||| |    
T  49113670 ggatcagatggattatccatctagtaaaaactaataatggatgggttggattgacataatacttaatggatggattagat--agttttttaacaaaaaaa 49113573  T
Q  133 aaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccctact 229  Q
    ||| || |||||||||||||||| |  ||||||||||||| ||||||||| || ||||| | ||| |||| |||| ||| |||||||||||| ||||    
T  49113572 aaaaagtggattgtaatggactaataaaccttttttgatctatccattaagattcaaattcatattcatctaatcaatcaattttgccacccttact 49113476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 39782310 - 39782255
Alignment:
Q  30 aacggatcggatggattatctatccaataaaatttaataatggatggattggatgg 85  Q
    |||||||||||||||| ||| ||||| | |||||||||||||||||||||||||||    
T  39782310 aacggatcggatggataatccatccatttaaatttaataatggatggattggatgg 39782255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 24822162 - 24822098
Alignment:
Q  163 ttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    |||||| ||||||||||||  |||||||||  |||| || ||||| |||||||||||||||||||    
T  24822162 tttttttatccatccattaggatccaaatctatatctattcaatccatccattttgccaccccta 24822098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 29722000 - 29722046
Alignment:
Q  171 tccatccattaaaatccaaatccgtatccatccaatctatccatttt 217  Q
    |||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  29722000 tccatccattaaaatctaaatccatatccattcaatccatccatttt 29722046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 45931499 - 45931708
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||| ||||||| ||| | ||  | | || | ||| |||||        
T  45931499 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatgaattggatagactttattctaattggatggactggatggtt 45931598  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
          || ||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||||||    
T  45931599 ttttttaagaaaaa-agaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaatccatccattt 45931697  T
Q  217 tgccaccccta 227  Q
    |||||||||||    
T  45931698 tgccaccccta 45931708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 24029787 - 24029870
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacc 223  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||||||||    
T  24029787 ggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaatccatccattttgccacc 24029870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 46240096 - 46239888
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| | ||| |      
T  46240096 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatgatt 46239997  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
           |  |||| ||||||  |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||  ||||| ||    
T  46239996 tttttttaagaaaa-aaaataatggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaattcatcca-tt 46239899  T
Q  217 tgccaccccta 227  Q
    |||||||||||    
T  46239898 tgccaccccta 46239888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 9154388 - 9154586
Alignment:
Q  30 aacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattannnnnnnnaacaaaa 129  Q
    |||||||||||||||  ||| ||||| |||||| |||||||||||||||||||||||||||| | |||||| | ||||||||| |        || ||||    
T  9154388 aacggatcggatggacaatccatccattaaaatctaataatggatggattggatggacataaaacttaatgcatggattggatgattttttaaaaaaaaa 9154487  T
Q  130 --acaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
      | ||||||| ||||| |||||||||| | ||  |||||||| ||||||||||  |||||||||| ||||||| ||||| |||||||||| ||||||||    
T  9154488 ataaaaaatagtggattttaatggactaat-gaatttttttgacccatccattaggatccaaatccatatccattcaatccatccattttgtcaccccta 9154586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 52361521 - 52361602
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatt 95  Q
    ||||||||  |||||| | ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  52361521 ataatacatcttgatttatggatcggatggattatccatccaataaaatctaataatggatggattagatggacataatatt 52361602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 45199877 - 45200066
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggatt 113  Q
    |||||||||||||||| | ||||||||||||||||| ||||| |||||| ||||||| |||||||  ||| ||| | ||  | | || | |||||||||     
T  45199877 ataatacactttgatttatggatcggatggattatccatccattaaaatctaataatagatggatcagattgactttattctaattggatggattggatg 45199976  T
Q  114 annnnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatcca 204  Q
    |        || ||||| ||||||  |||||||||||||||| || ||||||||||||||||||||||  ||| |||||| ||||||||||    
T  45199977 attttttttaagaaaaa-aaaataatggattgtaatggactaatgaaccttttttgatccatccattaggatcgaaatccatatccatcca 45200066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 24029665 - 24029735
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggac 87  Q
    ||||||||||||| | ||||||||||||||||  || || |||||| ||||||||||||||||||||||||    
T  24029665 atacactttgatttatggatcggatggattatacatacattaaaatctaataatggatggattggatggac 24029735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 3680386 - 3680487
Alignment:
Q  11 aatataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattgg 110  Q
    ||||||||||||||||||| |  ||||||||||||   | |  || ||||||||||||||||||| ||| |||| |||||||| |||||| | |||||||    
T  3680386 aatataatacactttgatttatagatcggatggatatcccaatcattaaaatttaataatggatgaattagatgaacataatacttaatggatggattgg 3680485  T
Q  111 at 112  Q
    ||    
T  3680486 at 3680487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 42824707 - 42824750
Alignment:
Q  163 ttttttgatccatccattaaaatccaaatccgtatccatccaat 206  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||    
T  42824707 ttttttgatccatccattaaaatctaaatccatattcatccaat 42824750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 14197667 - 14197760
Alignment:
Q  134 aatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||    
T  14197667 aatagtggattgtaatggactaatggaccttttttgatccatccattaagatccaaatccatatccatccaatccatccattttgccaccccta 14197760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 19965197 - 19964988
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| |||||        
T  19965197 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactggatggtt 19965098  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
          || ||||| | ||||| |||||||||||||||| || |||||||||||||||||||||| ||||||||| | ||||||||||||| ||||| ||    
T  19965097 ttttttaagaaaaa-ataatagtggattgtaatggactaatgaaccttttttgatccatccattagaatccaaattcatatccatccaatccatccactt 19964999  T
Q  217 tgccaccccta 227  Q
    | |||||||||    
T  19964998 tcccaccccta 19964988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 10365399 - 10365192
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| | ||| |      
T  10365399 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatgatt 10365300  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
           |  |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| ||    
T  10365299 tttttttaagaaaa-aaaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaatccatcca-tt 10365202  T
Q  217 tgccacccct 226  Q
    ||||||||||    
T  10365201 tgccacccct 10365192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 38477685 - 38477474
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattann 116  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| | |||        
T  38477685 atacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatggtt 38477586  T
Q  117 nnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattt 216  Q
           |  |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| ||    
T  38477585 tttttttaagaaaa-aaaatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaatccatcca-tt 38477488  T
Q  217 tgccacccctactg 230  Q
    ||||||||||||||    
T  38477487 tgccacccctactg 38477474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 42550342 - 42550255
Alignment:
Q  142 attgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccctact 229  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||| |||||| ||||||||||||| |||||||||||||||||||||    
T  42550342 attgtaatggactaatggaccttttttgatccatcgattaagatctaaatccatatccatccaatccatccattttgccacccctact 42550255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 9270414 - 9270325
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccctact 229  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||   ||||||||||||| |||||||||||||||||||||    
T  9270414 ggattgtaatggactaatggaccttttttgatccatccattaggatccaaatttatatccatccaatccatccattttgccacccctact 9270325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 14463535 - 14463730
Alignment:
Q  30 aacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattannnnnnnnaacaaaa 129  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||| ||||||| |  ||||| ||||||||||||           |||||    
T  14463535 aacggatcggatggataatccatccatttaaatttaataatggatggattggattgacataaaacctaatggaaggattggattgttttttttttcaaaa 14463634  T
Q  130 acaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccct 226  Q
    |  || | | ||||| |||||||||| | ||  ||||||| |||||||||||  |||||||||| |||||||| |||| ||||||||||||||||||    
T  14463635 aataattggtggattttaatggactaat-gaatttttttggtccatccattaggatccaaatccatatccatcaaatccatccattttgccacccct 14463730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 9043353 - 9043266
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    |||||||||||||||| || ||||||||||||||| ||||||  |||||||||| |||||||| |||| |||||||||| ||| ||||    
T  9043353 ggattgtaatggactaatgaaccttttttgatccacccattacgatccaaatccatatccatctaatccatccattttgtcacgccta 9043266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 9822627 - 9822697
Alignment:
Q  134 aatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatcca 204  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||  |||||||||| ||||||||||    
T  9822627 aatagtggattgtaatggactaattgaccttttttgatccatccattaggatccaaatccatatccatcca 9822697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 5711770 - 5711845
Alignment:
Q  152 actactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    |||| |||| ||||||||||||||||||||  |||||||||| ||||||||||||| |||||||||| || |||||    
T  5711770 actaatggatcttttttgatccatccattaggatccaaatccatatccatccaatccatccattttgtcatcccta 5711845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 9822510 - 9822577
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatg 84  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||  |||||||||||||||||||||    
T  9822510 atacactttgatttatggatcggatggattatccatccattaaaagctaataatggatggattggatg 9822577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 9270540 - 9270471
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatgga 86  Q
    ||||||||||||| | ||||||||||||||| | ||||| |||||| |||||||||||||||| ||||||    
T  9270540 atacactttgatttatggatcggatggattagccatccattaaaatctaataatggatggattagatgga 9270471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 8931781 - 8931717
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatcca 204  Q
    ||||||||||| |||| || ||||||||||||||||||||||  |||||||||| ||||||||||    
T  8931781 ggattgtaatgaactaatgaaccttttttgatccatccattaggatccaaatccatatccatcca 8931717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 8931877 - 8931809
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatgg 85  Q
    ||||||||||||| | ||||| ||||||||||| ||||| |||||| |||||||||||||| |||||||    
T  8931877 atacactttgatttatggatcagatggattatccatccattaaaatctaataatggatggactggatgg 8931809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 9043477 - 9043409
Alignment:
Q  16 aatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatg 84  Q
    |||||||||||||| | |||||  |||||||||| || || |||||| |||||||||||||||||||||    
T  9043477 aatacactttgatttatggatcaaatggattatccattcattaaaatctaataatggatggattggatg 9043409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 8861978 - 8861874
Alignment:
Q  123 aacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccac 222  Q
    ||||||||  |||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||||||||||||||    
T  8861978 aacaaaaaacaaatagtggattgtaatggactaatggaccttttttgatccattcattaagatccaaatccatatccatccaatccatccattttgccac 8861879  T
Q  223 cccta 227  Q
    |||||    
T  8861878 cccta 8861874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 5377535 - 5377630
Alignment:
Q  134 aatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccctact 229  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||| ||||| |||||||||||||||    
T  5377535 aatagtggattgtaatggactaatggaccttttttgatccatccattaggatccaaatccatatccatccaatccatccactttgccacccctact 5377630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 43325332 - 43325424
Alignment:
Q  134 aatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccct 226  Q
    ||||| |||||||||||||||| |||||||||||| |||||||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||    
T  43325332 aatagtggattgtaatggactaatggacctttttttatccatccattagaatccaaatccatattcatccaatccatccattttgccacccct 43325424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 31465428 - 31465220
Alignment:
Q  24 ttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat---tannnnnn 120  Q
    |||||| | ||||||||||||| ||| ||||| |||||| ||||||||||| |||| |||||||||||| ||||||| | |||||||||   |           
T  31465428 ttgatttatggatcggatggataatccatccattaaaatctaataatggatagatttgatggacataatctttaatggatggattggatggtttcttttc 31465329  T
Q  121 nnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgcc 220  Q
       | ||||| ||||||| ||||| ||||||| || ||||  |||||||||||||||||||  || ||||||  |||||||| |||| ||||||||||||    
T  31465328 aacaaaaaaaaaaaatagtggattttaatggattaatggaatttttttgatccatccattaggattcaaatcaatatccatcaaatccatccattttgcc 31465229  T
Q  221 acccctact 229  Q
    |||||||||    
T  31465228 acccctact 31465220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 43317797 - 43317695
Alignment:
Q  125 caaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccc 224  Q
    |||||| ||||||  |||||||||||||||| | || |||||||||| |||||||||| |||||||||| ||| ||||||||| ||||||||||||||||    
T  43317797 caaaaaaaaaataatggattgtaatggactattagatcttttttgattcatccattaagatccaaatccatattcatccaatccatccattttgccaccc 43317698  T
Q  225 cta 227  Q
    |||    
T  43317697 cta 43317695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 8862058 - 8861987
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatgg 85  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  8862058 ataatacactttgatttatggatcggatggattatccatccaataaaatctaataatggatggattggatgg 8861987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 35060388 - 35060476
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccat-ccaatctatccattttgccaccccta 227  Q
    ||||| |||||||||| ||||  |||||||||||||||||||  |||||||||| ||||||| |||||| |||||||||||||||||||    
T  35060388 ggattttaatggactaatggattttttttgatccatccattaggatccaaatccatatccatcccaatccatccattttgccaccccta 35060476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 35060320 - 35060378
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataa 91  Q
    ||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||    
T  35060320 ggatcggatggataatccatccatttaaatttaataatggatggattggatggacataa 35060378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 5377417 - 5377487
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggac 87  Q
    ||||||||||||| | ||||||| ||||||||  || || |||||| ||||||||||||||||||||||||    
T  5377417 atacactttgatttatggatcggctggattattcattcattaaaatctaataatggatggattggatggac 5377487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 43325251 - 43325305
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggac 87  Q
    ||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||    
T  43325251 ggatcggatggattatccatccattaaaatctaataatggatagattggatggac 43325305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 26860082 - 26860275
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattannnnnnnnaacaaaaaca 132  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| | |||          || ||||| |    
T  26860082 ggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactagatggttttttttaagaaaaa-a 26860180  T
Q  133 aaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
     ||||| |||||||||||||||| |||| ||||||||||||||||| ||  |||||||||| ||||||||||||| |||||||||||||||||||    
T  26860181 gaatagtggattgtaatggactaatggatcttttttgatccatccactaggatccaaatccatatccatccaatccatccattttgccaccccta 26860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 29208552 - 29208485
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatg 100  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||||||||||||||| ||||||||||    
T  29208552 ggatcggatggataatccatccatcaaaatttaataatggatggattggatggacattatatttaatg 29208485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 27111176 - 27111097
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat 112  Q
    ||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| |  ||||| | |||||||||    
T  27111176 ggatcggatggataatcaatccattaaaatttaataatgaatggattggatggacataaaacctaatggatggattggat 27111097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 27152970 - 27152891
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat 112  Q
    ||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||| |  ||||| | |||||||||    
T  27152970 ggatcggatggataatcaatccattaaaatttaataatgaatggattggatggacataaaacctaatggatggattggat 27152891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 19686598 - 19686684
Alignment:
Q  134 aatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgcca 221  Q
    ||||| ||||||||||| |||| ||||||||||  |||||||||||||  |||||||| | ||||||||||||| ||| |||||||||    
T  19686598 aatagtggattgtaatgaactaatggaccttttc-gatccatccattaggatccaaattcatatccatccaatccatctattttgcca 19686684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 29208430 - 29208367
Alignment:
Q  164 tttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    ||||| ||||||||||||  ||| |||||| |||||||| |||| |||||||||||||||||||    
T  29208430 tttttaatccatccattaggatctaaatccatatccatctaatccatccattttgccaccccta 29208367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 17004196 - 17004114
Alignment:
Q  30 aacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat 112  Q
    ||||||| |||||||| ||| ||||| | |||||||||||| ||||| |||||||||||||| |  ||||| | |||||||||    
T  17004196 aacggattggatggataatccatccatttaaatttaataatagatgggttggatggacataaaacctaatggatggattggat 17004114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 15917694 - 15917630
Alignment:
Q  163 ttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    |||||| ||||||||||| | |||||||| | ||||||||||||| ||||| ||||||| |||||    
T  15917694 tttttttatccatccattcagatccaaattcatatccatccaatccatccaatttgccagcccta 15917630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 19686508 - 19686551
Alignment:
Q  34 gatcggatggattatctatccaataaaatttaataatggatgga 77  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||    
T  19686508 gatcggatggattatccatccattaaaatctaataatggatgga 19686551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 27111047 - 27110981
Alignment:
Q  163 ttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccctact 229  Q
    |||||||||| ||||||||  |||||||||| ||| ||||| | | ||| |||||||||||||||||    
T  27111047 ttttttgatctatccattaggatccaaatccatattcatcctaaccatctattttgccacccctact 27110981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 27152844 - 27152778
Alignment:
Q  163 ttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccctact 229  Q
    |||||||||| ||||||||  |||||||||| ||| ||||| | | ||| |||||||||||||||||    
T  27152844 ttttttgatctatccattaggatccaaatccatattcatcctaaccatctattttgccacccctact 27152778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 13610571 - 13610489
Alignment:
Q  133 aaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccatttt 217  Q
    |||||| ||||||||||| ||||  ||||  ||||| |||||||||||| ||| ||||||| ||| |||||| || |||||||||    
T  13610571 aaatagtggattgtaatgaactaacggac--tttttaatccatccattagaattcaaatccatattcatccattccatccatttt 13610489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 17004055 - 17003994
Alignment:
Q  163 ttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccc 224  Q
    ||||||| |||||||||||| |||||||||| |||||||  |||| | ||||||| ||||||    
T  17004055 ttttttggtccatccattaagatccaaatccatatccatataatccacccattttaccaccc 17003994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 24041156 - 24040941
Alignment:
Q  16 aatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattan 115  Q
    |||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||  ||||||||||| | ||  | | || | ||||| |||       
T  24041156 aatacactttgatttatggatcggatggattatccatccattaaaatctaataatggataaattggatggacgttattctaattggatggattagatggt 24041057  T
Q  116 nnnnnnnaacaaaaacaaaatagaggattgta----atggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatc 211  Q
           || ||||| ||||||| ||||||||    |||||||| | ||||||||||||||||| |||||| |||||||| | ||||||||||||| |||    
T  24041056 tttttttaagaaaaa-aaaatagtggattgtaatgcatggactaatagaccttttttgatccattcattaagatccaaattcatatccatccaatccatc 24040958  T
Q  212 cattttgccacccctac 228  Q
    |||||||||||||||||    
T  24040957 cattttgccacccctac 24040941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 39317521 - 39317316
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggatt 113  Q
    |||||||||||||||| | |||||  ||| |||||| ||||| |||||| ||||||||||||||||| ||| ||||||||||||||| |  |||| |||     
T  39317521 ataatacactttgatttatggatcaaatgaattatccatccattaaaatctaataatggatggattgaatgaacataatatttaatggatagatttgatg 39317422  T
Q  114 annnnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatcca 213  Q
             ||||||   |||| || ||||| |||||||||| | ||  ||||||||||||||||||||||||||||| | ||||||||||||| |||||    
T  39317421 gtttttttcaacaaa---aaaaaagtggattttaatggactaat-gaatttttttgatccatccattaaaatccaaattcatatccatccaatccatcca 39317326  T
Q  214 ttttgccacc 223  Q
    ||||| ||||    
T  39317325 ttttgtcacc 39317316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 12806472 - 12806272
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat-------tannnnnnnnaac 125  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||| ||||| |||| || ||||| | ||||| |||       |         ||     
T  12806472 ggatcggatggataatccatccattaaaatttaataatggatggattgaatggatataaaatctaatggatggattagatggtcttttttttttttcaaa 12806373  T
Q  126 aaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccc 225  Q
    ||||| ||||| | ||||| |||||||||| || |  |||||||||||||||||||  |||||||||| |||||||| |||| |||||||||||||||||    
T  12806372 aaaaaaaaaatggtggattttaatggactaatgaat-ttttttgatccatccattaggatccaaatccatatccatcaaatccatccattttgccacccc 12806274  T
Q  226 ta 227  Q
    ||    
T  12806273 ta 12806272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 30884417 - 30884335
Alignment:
Q  30 aacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat 112  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |  ||||| | |||||||||    
T  30884417 aacggatcggatggataatccatccatttaaatttaataatggatggattggatggacataaaacctaatggatggattggat 30884335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 35976856 - 35976926
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggac 87  Q
    ||||||||||||| | ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||    
T  35976856 atacactttgatttatggatcggatggattatccatccattaaaatctaacaatggatggattggatggac 35976926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 8549530 - 8549477
Alignment:
Q  38 ggatggattatctatccaataaaatttaataatggatggattggatggacataa 91  Q
    |||||||| ||| ||||| | |||||||||||||||||||||||||||||||||    
T  8549530 ggatggataatccatccatttaaatttaataatggatggattggatggacataa 8549477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 8549424 - 8549341
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccc 224  Q
    ||||| |||||||||| ||||  |||||| ||||||||||||  |||||||||| |||||||  |||| ||||||||| ||||||    
T  8549424 ggattttaatggactaatggatttttttt-atccatccattatgatccaaatccatatccatgtaatccatccattttaccaccc 8549341  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 30884255 - 30884211
Alignment:
Q  182 aaatccaaatccgtatccatccaatctatccattttgccacccct 226  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||||    
T  30884255 aaatccatatccatatccatccaatccatccattttgccacccct 30884211  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 35976972 - 35977031
Alignment:
Q  134 aatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatcc 193  Q
    ||||| ||||||||||| |||| || ||||||||||||||||||| ||  ||||||||||    
T  35976972 aatagtggattgtaatgaactaatgaaccttttttgatccatccagtaggatccaaatcc 35977031  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 43855657 - 43855722
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggatt 79  Q
    |||||||||||||||| | |||| | |||||||||| ||||| |||||| ||||  ||||||||||    
T  43855657 ataatacactttgatttatggattgaatggattatccatccattaaaatctaattctggatggatt 43855722  T

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Target: scaffold1432 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 96 - 186
Alignment:
Q  134 aatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccc 224  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||||||  |||||||||| ||||||||||||| ||||| ||||||||||    
T  96 aatagtggattgtaatggactaatggaccttttttgatcaatccattaggatccaaatccatatccatccaatccatccactttgccaccc 186  T

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Target: scaffold1432; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 1 - 47
Alignment:
Q  38 ggatggattatctatccaataaaatttaataatggatggattggatg 84  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||    
T  1 ggatggattatccatccattaaaatctaataatggatggattggatg 47  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 32311798 - 32311594
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggatt 113  Q
    |||||||||||||||| | ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| | ||  | | || | ||| |||||     
T  32311798 ataatacactttgatttatggatcggatggattatccatccattaaaatctaataatggatggattggatggactttattctaattggatggactggatg 32311699  T
Q  114 annnnnnnnaacaaaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatcca 213  Q
             || ||||| | ||||| |||||||||||||||        |||||||||||||||||||  |||||||||| ||||||||||||| |||||    
T  32311698 gttttttttaagaaaaa-ataatagtggattgtaatggact--------ttttttgatccatccattaggatccaaatccatatccatccaatccatcca 32311608  T
Q  214 ttttgccaccccta 227  Q
     |||||||||||||    
T  32311607 ctttgccaccccta 32311594  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 43366109 - 43366283
Alignment:
Q  51 atccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggattannnnnnnnaacaaaaacaaaatagaggattgtaatg 150  Q
    ||||| ||||||||||||||||||| ||||||||||||||| || ||||| | |||||||||            |||||| ||||| | ||||| |||||    
T  43366109 atccattaaaatttaataatggatgaattggatggacataaaatctaatggatggattggatggttttttttt-caaaaaaaaaatggtggattttaatg 43366207  T
Q  151 gactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    ||||| ||||  |||||||||||||||||||  |||||||| | ||||||||||||| |||||||||||||||||||    
T  43366208 gactaatggat-ttttttgatccatccattatgatccaaattcatatccatccaatccatccattttgccaccccta 43366283  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 52746826 - 52746921
Alignment:
Q  17 atacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattggat 112  Q
    |||||| |||||| | ||||||||||||| ||||||||| |||||| |||||||| ||||||||||| |||||||| ||||||| | |||||||||    
T  52746826 atacacattgattgatggatcggatggataatctatccattaaaatctaataatgaatggattggattgacataatctttaatggatggattggat 52746921  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 8735862 - 8735935
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggac 87  Q
    |||||||||||||||| | ||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  8735862 ataatacactttgatttatggatcggatggattatccatccattaaaatcaaataatggatggattggatggac 8735935  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 9088103 - 9088176
Alignment:
Q  14 ataatacactttgattaacggatcggatggattatctatccaataaaatttaataatggatggattggatggac 87  Q
    |||||||||||||||| | ||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  9088103 ataatacactttgatttatggatcggatggattatccatccattaaaatcaaataatggatggattggatggac 9088176  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 15510853 - 15510657
Alignment:
Q  30 aacggatcggatggattatctatccaataaaatttaataatggatggattggatggacataatatttaatgaaaggattgga---ttannnnnnnnaaca 126  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||| ||||||| |  ||||| | ||||||||   ||           ||    
T  15510853 aacggatcggatggataatccatccatttaaatttaataatggatggattggatagacataaaacctaatggatggattggatggtttttttttttttca 15510754  T
Q  127 aaaacaaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccc 224  Q
    |||| ||| | | ||||| |||||||||| | ||  ||||||| |||||||||||  |||||||||| ||||||||||||| ||||||||||||||||    
T  15510753 aaaaaaaattggtggattttaatggactaattga-tttttttggtccatccattaggatccaaatccatatccatccaatccatccattttgccaccc 15510657  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 8735977 - 8736068
Alignment:
Q  132 aaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacc 223  Q
    ||||||| |||||||||||||||| || ||||||||| || |||||||||| || ||||| | |||||||| |||| ||| ||||| |||||    
T  8735977 aaaatagtggattgtaatggactaatgaacctttttttattcatccattaagattcaaattcatatccatctaatccatctatttttccacc 8736068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 9088218 - 9088309
Alignment:
Q  132 aaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccacc 223  Q
    ||||||| |||||||||||||||| || ||||||||| || |||||||||| || ||||| | |||||||| |||| ||| ||||| |||||    
T  9088218 aaaatagtggattgtaatggactaatgaacctttttttattcatccattaagattcaaattcatatccatctaatccatctatttttccacc 9088309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 24912569 - 24912655
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    ||||| |||||||||| ||||  |||||| ||| ||||||||  |||||||||| ||||||||||||| ||||||||||||| |||||    
T  24912569 ggattttaatggactaatggat-ttttttaatcgatccattaggatccaaatccatatccatccaatccatccattttgccatcccta 24912655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 5629219 - 5629278
Alignment:
Q  170 atccatccattaaaatccaaatccgtatccatccaatctatccattttgccacccctact 229  Q
    ||||||||||||  |||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  5629219 atccatccattatgatccaaatccatatccattcaatcgatccattttaccacccctact 5629278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 24912470 - 24912521
Alignment:
Q  40 atggattatctatccaataaaatttaataatggatggattggatggacataa 91  Q
    |||||| ||| ||||| | |||||||||||||||||||||||||||||||||    
T  24912470 atggataatccatccatttaaatttaataatggatggattggatggacataa 24912521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 10054724 - 10054787
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatcca 204  Q
    ||||| |||||||||| ||||  |||||||||||||||||||  |||||||||| ||||||||||    
T  10054724 ggattttaatggactaatggat-ttttttgatccatccattaggatccaaatccatatccatcca 10054787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 35649654 - 35649725
Alignment:
Q  132 aaaatagaggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatcca 204  Q
    ||||||| |||||||||||||||| |||| ||||||| ||| ||||||||  |||||||| | ||| ||||||    
T  35649654 aaaatagtggattgtaatggactaatgga-ctttttttatctatccattaggatccaaattcatattcatcca 35649725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 11731 - 11644
Alignment:
Q  140 ggattgtaatggactactggaccttttttgatccatccattaaaatccaaatccgtatccatccaatctatccattttgccaccccta 227  Q
    ||||| |||||| ||| ||||  |||||||||||||||||||  |||||||||| ||  ||||||||| |||||||||||||||||||    
T  11731 ggattttaatgggctaatggattttttttgatccatccattaggatccaaatccataatcatccaatccatccattttgccaccccta 11644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 12957 - 12899
Alignment:
Q  33 ggatcggatggattatctatccaataaaatttaataatggatggattggatggacataa 91  Q
    ||||||||||| | ||| || || | |||||||||||||||||||||| ||||||||||    
T  12957 ggatcggatgggtaatccattcatttaaatttaataatggatggattgcatggacataa 12899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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