View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_2 (Length: 767)

Name: NF17596_low_2
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_2
NF17596_low_2
[»] chr5 (4 HSPs)
chr5 (19-767)||(24318008-24318757)
chr5 (427-752)||(24187914-24188239)
chr5 (610-740)||(20550202-20550332)
chr5 (385-513)||(17430467-17430597)
[»] chr3 (4 HSPs)
chr3 (44-452)||(16227928-16228336)
chr3 (318-461)||(3398972-3399115)
chr3 (640-744)||(16230834-16230937)
chr3 (624-738)||(3398693-3398807)
[»] chr8 (4 HSPs)
chr8 (493-765)||(24537175-24537448)
chr8 (593-710)||(26827267-26827384)
chr8 (171-283)||(26827696-26827808)
chr8 (706-767)||(26826005-26826066)
[»] scaffold0008 (2 HSPs)
scaffold0008 (77-362)||(232857-233142)
scaffold0008 (570-761)||(233346-233537)
[»] scaffold0427 (1 HSPs)
scaffold0427 (608-738)||(4881-5011)


Alignment Details
Target: chr5 (Bit Score: 702; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 19 - 767
Target Start/End: Complemental strand, 24318757 - 24318008
Alignment:
19 agcaggcctccttaagcaaagaatttcatgccaaggattaaagagaattcatatatgactctagtgtctgcaatcactatgtctaaatagtaatcgatgt 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
24318757 agcaggcctccttaagcaaagaatttcatgccaaggattagagagaattcatatatgactctggtgtctgcaatcactatgtctaaatagtaatcgaagt 24318658  T
119 ccctgatgttaagtggaaaattcttaagtacactaagtgcctcttcttcgtggccattagcataccctatcgtataaggatatgaggatatcttcttaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24318657 ccctgatgttaagtggaaaattcttaagtacactaagtgcctcttcttcgtggccattagcataccctatcgtataaggatatgaggatatcttcttaat 24318558  T
219 ccctaattcccttgccttggtcaagctcattaggttagcattcgctcctgaatcatacaatccttgttcgatatcatccccatttatctcgatgggtaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
24318557 ccctaattcccttgccttggtcaagctcattaggttagcattcgctcctgaatcatacaatccttgttcgatatcatccccatttatctcgatgggtaga 24318458  T
319 gtaaagcatccttcaccatcaaacctgacttcagccgatacctcatacatatgatgacactcgctggttagtgatatgagttcttcttcagataggtcgg 418  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
24318457 gtaaagcatccttcaccatcaaacctgacttcagccaatacctcatacgtatgatgacactcgctggttagtgatatgagttcttcttcagataggtcga 24318358  T
419 catgttttttcaagagttcttgaagaaacatgatgcagcatggg-tttgttcggccatttccttaataggcttgattaccttgtactgcttgagaacttg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24318357 catgttttttcaagagttcttgaagaaacatgatgcagcatgggctttgttcggccatttccttaataggcttgattaccttgtactgcttgagaacttg 24318258  T
518 atgcaaagcatttaactctggcggagattcttgtctctttgcttgtcttttgtctgaggtgtctctctttctacttccaccgaatgaatttgctcgtcct 617  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24318257 atgcaaagcatttaactctggcggacattcttgtctctttgcttgtcttttgtctgaggtgtctctctttctacttccaccgaatgaatttgctcgtcct 24318158  T
618 ttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaaca 717  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
24318157 ttccagcttgttttgatttcaacaactcttgtcgctttagatctacttcttgctgaaattcgaggtatcccgactctttctccagattctccacaaaaca 24318058  T
718 actagtaaccttaaccttctttagtaaattgatcagttgctccagattat 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
24318057 actagtaaccttaaccttctttagtaaattgatcagttgctccagattat 24318008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 427 - 752
Target Start/End: Complemental strand, 24188239 - 24187914
Alignment:
427 ttcaagagttcttgaagaaacatgatgcagcatggg-tttgttcggccatttccttaataggcttgattaccttgtactgcttgagaacttgatgcaaag 525  Q
    |||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||| ||| |||||||||||||||| ||||||| || ||||||||    
24188239 ttcaagagttcttgaagaaacatgatgcagcatgggctttgttcgatcgtttccttaatgggcatgattaccttgtactgtttgagaattttatgcaaag 24188140  T
526 catttaactctggcgg-agattcttgtctctttgcttgtcttttgtctgaggtgtctctctttctacttccaccgaatgaatttgctcgtcctttccagc 624  Q
    |||||||||||||||| | ||||| | || ||||||||||||   |||||||||||||||| | |||||||||||||||||| || ||||||||||||||    
24188139 catttaactctggcggcacattctcg-ct-tttgcttgtcttccttctgaggtgtctctctatttacttccaccgaatgaatatgttcgtcctttccagc 24188042  T
625 ttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagta 724  Q
    ||||||||| |||||||||| ||||||||  ||  || | |||||||||||||| ||||||| || |||||| ||||  |||| ||||||| ||||||||    
24188041 ttgttttgacttcaacaactcttgtcgctgcagtcctgcctcttgctgaaattcaaggtatcccggctctttttccaacttcttcacaaaagaactagta 24187942  T
725 accttaaccttctttagtaaattgatca 752  Q
    ||||| |||||||||||||| |||||||    
24187941 accttcaccttctttagtaatttgatca 24187914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 610 - 740
Target Start/End: Complemental strand, 20550332 - 20550202
Alignment:
610 ctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctcc 709  Q
    |||||| ||||||||||||||||| || ||||||||||||||||| || ||  |||||||||| ||||| |||||||  | |||||||||||| ||||||    
20550332 ctcgtcttttccagcttgttttgacttaaacaactattgtcgcttcagctccgcttcttgctggaattcaaggtatcctggctctttctccagcttctcc 20550233  T
710 acaaaacaactagtaaccttaaccttcttta 740  Q
    | |||| ||||||||||||| || |||||||    
20550232 ataaaagaactagtaaccttcacattcttta 20550202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 385 - 513
Target Start/End: Original strand, 17430467 - 17430597
Alignment:
385 gttagtgatatgagttcttcttcagataggtcggcatgttttttcaagagttcttgaagaaacatgatgcagcatgg-gtttgttcggccatttccttaa 483  Q
    |||||||||||||||||||| || ||||| |||||||   | ||||| ||||||||||||||| |||||||||||||  |||| |||||||||||||| |    
17430467 gttagtgatatgagttcttcctcggatagatcggcattaatcttcaatagttcttgaagaaacttgatgcagcatggactttgatcggccatttccttga 17430566  T
484 taggcttgattaccttgtac-tgcttgagaa 513  Q
    | ||| |||||||  ||||| ||||||||||    
17430567 tcggcatgattactctgtacatgcttgagaa 17430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 9e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 44 - 452
Target Start/End: Original strand, 16227928 - 16228336
Alignment:
44 tcatgccaaggattaaagagaattcatatatgactctagtgtctgcaatcactatgtctaaatagtaatcgatgtccctgatgttaagtggaaaattctt 143  Q
    ||||||| |||||||| | ||| |||||| |   ||| ||| ||||| |||| ||||||||| ||||||||| | |||| ||||||| || ||||||  |    
16227928 tcatgcctaggattaacgggaaatcatatctccatctggtgcctgcattcacgatgtctaaacagtaatcgaggccccttatgttaattgtaaaatttat 16228027  T
144 aagtacactaagtgcctcttcttcgtggccattagcataccctatcgtataaggatatgaggatatcttcttaatccctaattcccttgccttggtcaag 243  Q
     || |  |||| || |||||| |||||||||||||||||||||||||||||||||||||  |||||||||  | | ||||| ||||||||||||||||||    
16228028 taggatgctaattgtctcttcctcgtggccattagcataccctatcgtataaggatatggagatatcttcaaatttcctaactcccttgccttggtcaag 16228127  T
244 ctcattaggttagcattcgctcctgaatcatacaatccttgttcgatatcatccccatttatctcgatgggtaaagtaaagcatccttcaccatcaaacc 343  Q
    |||||| |||| |||||||||||| ||||| ||||||||||  ||||||  || || |||||   |||||||| ||||||||||| ||||||||| || |    
16228128 ctcattcggttggcattcgctccttaatcacacaatccttgcccgatatattctccctttatgcggatgggtagagtaaagcatctttcaccatcgaatc 16228227  T
344 tgacttcagccgatacctcatacatatgatgacactcgctggttagtgatatgagttcttcttcagataggtcggcatgttttttcaagagttcttgaag 443  Q
    |||||||||||| || | | ||||| | |||||| || || ||||||||||||||||||||||||||||| || ||||   | |||||  ||||||||||    
16228228 tgacttcagccggtaacccgtacatgttatgacattctctagttagtgatatgagttcttcttcagatagatcagcattggtcttcaattgttcttgaag 16228327  T
444 aaacatgat 452  Q
    |||| ||||    
16228328 aaacttgat 16228336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 318 - 461
Target Start/End: Complemental strand, 3399115 - 3398972
Alignment:
318 agtaaagcatccttcaccatcaaacctgacttcagccgatacctcatacatatgatgacactcgctggttagtgatatgagttcttcttcagataggtcg 417  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||| ||| | |||||| | ||||| |  ||||| |||| |||||| |||||||| |      
3399115 agtaaagcaaccttcaccatcaaacctgactacagccggtacctcgtacgtgtgatgaaattcgctagaaagtgagatgaattcttcctcagatagatta 3399016  T
418 gcatgttttttcaagagttcttgaagaaacatgatgcagcatgg 461  Q
    |||| | | || ||||| |||||||||||| |||||||||||||    
3399015 gcatttgtctttaagagctcttgaagaaacttgatgcagcatgg 3398972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 744
Target Start/End: Complemental strand, 16230937 - 16230834
Alignment:
640 caactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttcttt 739  Q
    ||||| ||||||||| || || ||||||||| ||| ||| | |||||| | |||||||||||| || || |||||| ||||||||||||| |||||||||    
16230937 caactcttgtcgcttcagctcaacttcttgcggaa-ttcaatgtatcatggctctttctccagcttttctacaaaagaactagtaaccttcaccttcttt 16230839  T
740 agtaa 744  Q
    |||||    
16230838 agtaa 16230834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 738
Target Start/End: Complemental strand, 3398807 - 3398693
Alignment:
624 cttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagt 723  Q
    |||||||||| |||||||||| || |||||||||||  | ||||| ||||||| | |||||||  ||||||||  |||  ||||||||| |  || | ||    
3398807 cttgttttgacttcaacaactcttatcgctttagatgaatttctttctgaaatgcaaggtatcctgactcttttcccatcttctccacataggaattcgt 3398708  T
724 aaccttaaccttctt 738  Q
     ||||||||||||||    
3398707 caccttaaccttctt 3398693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 493 - 765
Target Start/End: Original strand, 24537175 - 24537448
Alignment:
493 ttaccttgtactgcttgagaacttgatgcaaagcatttaactctggcgg-agattcttgtctctttgcttgtcttttgtctgaggtgtctctctttctac 591  Q
    |||| |||||||||||||||| |||||||||| |||| ||||||||||| |  |||| ||| | ||| ||||||| ||||||| |  ||||||||| |||    
24537175 ttactttgtactgcttgagaatttgatgcaaaacattgaactctggcggcacgttctcgtcccgttgtttgtcttctgtctgaagcttctctctttttac 24537274  T
592 ttccaccgaatgaatttgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgac 691  Q
    ||| ||| ||||||| ||||| || ||||||||||| ||||| |||  ||||| ||||||||||| ||||||||||||||||||||| ||||| |  | |    
24537275 ttctaccaaatgaatctgctcttcttttccagcttggtttgacttccgcaactcttgtcgctttaaatctacttcttgctgaaattcaaggtaccctggc 24537374  T
692 tctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagatt 765  Q
    ||||||||||  |||||||||||| ||  ||| ||||| |||||||| |||||| |||||| |||||| |||||    
24537375 tctttctccaacttctccacaaaagaagaagtcacctttaccttcttgagtaaagtgatcacttgctctagatt 24537448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 593 - 710
Target Start/End: Complemental strand, 26827384 - 26827267
Alignment:
593 tccaccgaatgaatttgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgact 692  Q
    |||||||| ||||  |||||||| ||||||||||||||||| | || ||||| ||||||||| || || ||||||||||| |||||  |||| |  | ||    
26827384 tccaccgattgaacctgctcgtcttttccagcttgttttgactgcatcaactcttgtcgcttcagctccacttcttgctggaattcatggtaccctggct 26827285  T
693 ctttctccagattctcca 710  Q
    |||||||||| |||||||    
26827284 ctttctccagcttctcca 26827267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 171 - 283
Target Start/End: Complemental strand, 26827808 - 26827696
Alignment:
171 gccattagcataccctatcgtataaggatatgaggatatcttcttaatccctaattcccttgccttggtcaagctcattaggttagcattcgctcctgaa 270  Q
    ||||||||| |||||||| ||||||||||||||   || |    |||| || || ||||||||||||||||||| ||||||||||||||| | | |||||    
26827808 gccattagcgtaccctattgtataaggatatgattctaccgatctaattcccaactcccttgccttggtcaagcacattaggttagcatttgtttctgaa 26827709  T
271 tcatacaatcctt 283  Q
    ||||| |||||||    
26827708 tcatataatcctt 26827696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 767
Target Start/End: Complemental strand, 26826066 - 26826005
Alignment:
706 ctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctccagattat 767  Q
    |||||||||| ||||||||||||| |||||||||| |||||| |||| ||||| || |||||    
26826066 ctccacaaaagaactagtaaccttcaccttctttaataaatttatcaattgcttcaaattat 26826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 78; Significance: 6e-36; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 77 - 362
Target Start/End: Original strand, 232857 - 233142
Alignment:
77 ctctagtgtctgcaatcactatgtctaaatagtaatcgatgtccctgatgttaagtggaaaattcttaagtacactaagtgcctcttcttcgtggccatt 176  Q
    |||| |||| ||||||||| ||||||||| | ||||||| | ||   ||||||| || |||||||| |||||  | ||  || | |||||| |  |||||    
232857 ctctggtgtttgcaatcacgatgtctaaacaataatcgaagccctcaatgttaattgcaaaattctcaagtatgccaatagctttttcttcttttccatt 232956  T
177 agcataccctatcgtataaggatatgaggatatcttcttaatccctaattcccttgccttggtcaagctcattaggttagcattcgctcctgaatcatac 276  Q
    ||||||| |||| | |||||||||||| |||||||| ||| | || || ||||||||||||| |||||||||||||||||  || ||||| |||||| |     
232957 agcatactctattgcataaggatatgatgatatctttttatttcccaactcccttgccttggccaagctcattaggttagagtttgctccagaatcacat 233056  T
277 aatccttgttcgatatcatccccatttatctcgatgggtaaagtaaagcatccttcaccatcaaacctgacttcagccgatacctc 362  Q
    ||||||||  ||||||  || ||||| | || |||||||||||||||||||| |||||||| |||||||||||  |||| ||||||    
233057 aatccttgcccgatatattctccattaaccttgatgggtaaagtaaagcatcattcaccataaaacctgactttggccggtacctc 233142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 570 - 761
Target Start/End: Original strand, 233346 - 233537
Alignment:
570 tctgaggtgtctctctttctacttccaccgaatgaatttgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttg 669  Q
    |||||| | |||||||||| | ||| || |||||||| ||||| ||||||||||| |||||||| || | |||||  |||||||| || |||||||| ||    
233346 tctgagatttctctctttcaatttcaactgaatgaatctgctcatcctttccagcctgttttgactttagcaactcctgtcgcttcagctctacttcatg 233445  T
670 ctgaaattcgaggtatcacgactctttctccagattctccacaaaacaactagtaaccttaaccttctttagtaaattgatcagttgctcca 761  Q
     || ||||||||||| |  | ||||||| |||| |||||||||||| ||||||||||||| |||||||||| |||||| | || ||||||||    
233446 atggaattcgaggtaccctggctctttcaccagcttctccacaaaagaactagtaaccttcaccttctttaataaatttaccaattgctcca 233537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 608 - 738
Target Start/End: Complemental strand, 5011 - 4881
Alignment:
608 tgctcgtcctttccagcttgttttgatttcaacaactattgtcgctttagatctacttcttgctgaaattcgaggtatcacgactctttctccagattct 707  Q
    ||||| || |||| ||||||| |||| |||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||||| ||||| ||||    
5011 tgctcatcttttcgagcttgtgttgacttcaacaactcttatcgctttatatctacttcttgctaaaattcgaggtatcccgactctttttccagcttct 4912  T
708 ccacaaaacaactagtaaccttaaccttctt 738  Q
    |||||||| || | || ||||||||||||||    
4911 ccacaaaagaagtcgtcaccttaaccttctt 4881  T

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