View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_20 (Length: 413)
Name: NF17596_low_20
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 47117358 - 47117704
Alignment:
| Q |
12 |
cctgtggtagctattattcctttcttacttgtatttatattgatatgttgttgaatgttcattcatccaattcgatgatgttgttgcattctattagaca |
111 |
Q |
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| T |
47117358 |
cctgtggtagctattatttctttcttacttgtatttatattgatatgttgttgaatgttcattcatccaattcgatgatgttgttgcattctattagaca |
47117457 |
T |
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| Q |
112 |
gttaagagtactcaagaacaacctccaccaatgagacctcgttcacctatggtaagcttcatgcgagttgaatttactactaatcacattattttgaaaa |
211 |
Q |
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| T |
47117458 |
gttaagagtactcaagaacaacctccaccaatgagacctcgttcacctatggtaagcttcatgcgagttgaatttactactaatcacattattttgaaaa |
47117557 |
T |
|
| Q |
212 |
ttagtatgaaattttgaaacatctaatttttgtgttgtttctatcagtcaattcgctccactcaggaacaacctctatctgcaagatcacggtcaccaat |
311 |
Q |
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| T |
47117558 |
ttagtatgaaattttgaaacatctaatttttgtgttgtttctattagtcaattcgctctactcaggaacaacctctatctgcaagatcacggtcaccaat |
47117657 |
T |
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| Q |
312 |
ggtataattggcttcagtaaatagaaccgcttaaattttagatcata |
358 |
Q |
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| T |
47117658 |
ggtataattggcttcagtaaatagaaccgcttaaattttagatcata |
47117704 |
T |
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