View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_21 (Length: 405)
Name: NF17596_low_21
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 6 - 368
Target Start/End: Original strand, 2434339 - 2434702
Alignment:
| Q |
6 |
atgtacaacacaaacaccacaaagatttttgtgacacaattcgtgagatggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttt |
105 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434339 |
atgtacaacacaaacaccacaaagattttagtgacacaattcctgagatggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttt |
2434438 |
T |
|
| Q |
106 |
tcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaatgatgttgttttgctcaaaaatctgtacttgtct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2434439 |
tcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaatgatgtggttttgctcaaaaatctgtacttgtct |
2434538 |
T |
|
| Q |
206 |
tgtgatccttacatgagactcctgatgaccaaggacactactgcaggacttggtgctctcacccctggttctgtatgtcatgctctct-ctttcatcaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2434539 |
tgtgatccttacatgagactcctgatgaccaaggacactactgcaggacttggtgctctcacccctggttctgtatgtcatgctctctcctttcatcaat |
2434638 |
T |
|
| Q |
305 |
tattattagatatcagtataagataacacagttgcaattgatcaaggaatctgaagtattgaga |
368 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2434639 |
tattattagatatcagtataagctaacacagttgcaattgatcaaggaatctgaagtattgaga |
2434702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 311
Target Start/End: Original strand, 2430755 - 2431064
Alignment:
| Q |
2 |
gtacatgtacaacacaaacaccacaaagatttttgtgacacaattcgtgagatggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctg |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2430755 |
gtacatgtacaacacaaacaccacaaagatttttgcaacacaattcctgagatggcggaaatgaggaacaagcaagtgattctgaaggactatgtgtctg |
2430854 |
T |
|
| Q |
102 |
gttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaatgatgttgttttgctcaaaaatctgtactt |
201 |
Q |
| |
|
|||||||||||||||||||| | || ||||| |||||||| ||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||| |
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|
| T |
2430855 |
gttttcctaaagaatcagacatgaatattgtagacagtactataactctcaagcttccacaaggttcaaatgatgttgttctgctaaaaaatctgtactt |
2430954 |
T |
|
| Q |
202 |
gtcttgtgatccttacatgagactcctgatgaccaaggacactactgcaggacttggtgctctcacccctggttctgtatgtcatgctctctctttcatc |
301 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
2430955 |
gtcttgtgatccttacatgagaatccgcatgaccaaagacactactgcagaacttggtgctctcacccctggttttgtatgtcatgctctctctttcatc |
2431054 |
T |
|
| Q |
302 |
aattattatt |
311 |
Q |
| |
|
|||||||||| |
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|
| T |
2431055 |
aattattatt |
2431064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 53 - 300
Target Start/End: Original strand, 2427552 - 2427799
Alignment:
| Q |
53 |
atggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactca |
152 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||||| || | |||| |
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|
| T |
2427552 |
atggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtacaattattctca |
2427651 |
T |
|
| Q |
153 |
agcttccacaaggttccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgagactcctgatgaccaaggacactactgcagg |
252 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||| ||||| | | ||| |||||||||||| |||||| |
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|
| T |
2427652 |
accttccacaaggttccaatgatgttgttctgctcaaaaatctctacttatcctgtgatccttacctgagaattttcatggccaaggacactattgcagg |
2427751 |
T |
|
| Q |
253 |
acttggtgctctcacccctggttctgtatgtcatgctctctctttcat |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2427752 |
acttggtggtctcacccctggttctgtatgtcatgctctctctttcat |
2427799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 53 - 300
Target Start/End: Original strand, 1457845 - 1458092
Alignment:
| Q |
53 |
atggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactca |
152 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||||| || | |||| |
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|
| T |
1457845 |
atggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtacaattattctca |
1457944 |
T |
|
| Q |
153 |
agcttccacaaggttccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgagactcctgatgaccaaggacactactgcagg |
252 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||| |||||||| ||||| || |||||||||||| ||||| | | ||| |||||||||||| |||||| |
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|
| T |
1457945 |
accttccacaaggttccaatgatgttgttctgctaaaaaatctctacttatcctgtgatccttacctgagaattttcatggccaaggacactattgcagg |
1458044 |
T |
|
| Q |
253 |
acttggtgctctcacccctggttctgtatgtcatgctctctctttcat |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1458045 |
acttggtggtctcacccctggttctgtatgtcatgctctctctttcat |
1458092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 2519370 - 2519215
Alignment:
| Q |
67 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggt |
166 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||| | |
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|
| T |
2519370 |
gaacaagcaagtaattctgaaacactatgtgtctggttttcctaaagaatcagacatgaacatcattgacagtaccataactctcaagcttccacaagct |
2519271 |
T |
|
| Q |
167 |
tccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
222 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2519270 |
tccaatgatgttcttctgctcaaaaatctctacttgtcttgtgatccttacatgag |
2519215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 2507568 - 2507413
Alignment:
| Q |
67 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggt |
166 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||| ||||| |
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|
| T |
2507568 |
gaacaagcaagtgcttctgaaacactatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggt |
2507469 |
T |
|
| Q |
167 |
tccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
222 |
Q |
| |
|
||||||||| ||| ||| | |||||||| |||||||||||||||||||||||||| |
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|
| T |
2507468 |
tccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgag |
2507413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 2499040 - 2498881
Alignment:
| Q |
60 |
aagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttcc |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||| |||| || || || |||||||| |
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|
| T |
2499040 |
aagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttcc |
2498941 |
T |
|
| Q |
160 |
acaaggttccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
222 |
Q |
| |
|
||||||||||||||| |||| |||| |||||| | ||||||||||||||||| | |||||| |
|
|
| T |
2498940 |
acaaggttccaatga---tgttctgctaaaaaatttatacttgtcttgtgatccattcatgag |
2498881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 2514658 - 2514503
Alignment:
| Q |
67 |
gaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggt |
166 |
Q |
| |
|
|||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||||| ||||| |
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|
| T |
2514658 |
gaaccagcaagtgcttctgaaacattatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggt |
2514559 |
T |
|
| Q |
167 |
tccaatgatgttgttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
222 |
Q |
| |
|
||||||||| ||| ||| | |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
2514558 |
tccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttaaatgag |
2514503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 391
Target Start/End: Original strand, 2431273 - 2431350
Alignment:
| Q |
309 |
attagatatcagtataagataacacagttgcaattgatcaaggaatctgaagtattgagaatttattttttatcatagaataa |
391 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
2431273 |
attagatatcagtataagctaacacagttgattttgataaaggaat-----gtattgagaatttattttttatcatagaataa |
2431350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 11845932 - 11845990
Alignment:
| Q |
113 |
gaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaa |
171 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
11845932 |
gaatcagacatgaacattgttgacagtaccataacattcaaaattccacaaggctccaa |
11845990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 23924962 - 23925020
Alignment:
| Q |
113 |
gaatcagacctcaacattgttgacagtaccataacactcaagcttccacaaggttccaa |
171 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||| |||| |||||||||| ||||| |
|
|
| T |
23924962 |
gaatcagacatgaacattgttgatagtaccataacattcaaaattccacaaggctccaa |
23925020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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