View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_24 (Length: 374)
Name: NF17596_low_24
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 87 - 368
Target Start/End: Complemental strand, 34263991 - 34263710
Alignment:
| Q |
87 |
tcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaac |
186 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||||||||||||||||| |
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| T |
34263991 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaac |
34263892 |
T |
|
| Q |
187 |
aatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaact |
286 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
34263891 |
agtcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaact |
34263792 |
T |
|
| Q |
287 |
cccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattc |
368 |
Q |
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| T |
34263791 |
ctcaagatcttcttggtcttgggacacacacccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattc |
34263710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 186 - 368
Target Start/End: Complemental strand, 35622810 - 35622628
Alignment:
| Q |
186 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35622810 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
35622711 |
T |
|
| Q |
286 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattc |
368 |
Q |
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| T |
35622710 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattc |
35622628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 35623184 - 35622991
Alignment:
| Q |
1 |
ttttagaaaaagcaaaggatggtccggtgcaaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaat |
100 |
Q |
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|||||| || ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35623184 |
ttttagtaatagcaatggaaggtccggtgcaaattgatgtacctgaatctcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaat |
35623085 |
T |
|
| Q |
101 |
catagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35623084 |
catagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattc |
35622991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 14542762 - 14543088
Alignment:
| Q |
30 |
caaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggt |
129 |
Q |
| |
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|||||| |||||||||||| || ||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14542762 |
caaattaatgtacctgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaaaaaagtttatcaaattttgggt |
14542861 |
T |
|
| Q |
130 |
ggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggca |
229 |
Q |
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|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542862 |
ggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggca |
14542961 |
T |
|
| Q |
230 |
ctgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaactcccaagatcctcttggtcttgggacacacactcttcaaacaca |
329 |
Q |
| |
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||| |||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
14542962 |
ctg------------cacaaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacaca |
14543049 |
T |
|
| Q |
330 |
atcatttcttattggaatcttgaatgtgctagcacattc |
368 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |
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| T |
14543050 |
atcatttctcattggaatcttgaatgtgctagcacattc |
14543088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 368
Target Start/End: Complemental strand, 14580825 - 14580499
Alignment:
| Q |
30 |
caaattgatgtacctgaatttcgttccaatattgagcaagaaaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggt |
129 |
Q |
| |
|
|||||| |||||| ||||| || ||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14580825 |
caaattaatgtacttgaatctcattccaatattgagcaagaaaagaaaccaattttgtcatgggatgtaattatagaaaaaagtttatcaaattttgggt |
14580726 |
T |
|
| Q |
130 |
ggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggca |
229 |
Q |
| |
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|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580725 |
ggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggca |
14580626 |
T |
|
| Q |
230 |
ctgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaactcccaagatcctcttggtcttgggacacacactcttcaaacaca |
329 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
14580625 |
ctgca------------caaattcaatatgcacttcatcctctgatatatgcaaactcccaagatcttcttggtcttgggacacacatccttcaaacaca |
14580538 |
T |
|
| Q |
330 |
atcatttcttattggaatcttgaatgtgctagcacattc |
368 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
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| T |
14580537 |
atcatttctcattggaatcttgaatgtgctagcacattc |
14580499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 83 - 368
Target Start/End: Original strand, 37599763 - 37600048
Alignment:
| Q |
83 |
gttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgca |
182 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||| || |||||||| || |||||||||||||||||||| || ||||||||||||||| |
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| T |
37599763 |
gttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgca |
37599862 |
T |
|
| Q |
183 |
caacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgca |
282 |
Q |
| |
|
||| | ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
37599863 |
caagagtcatttataagcatttacactgataattacccaaaatggcattgcatagacacaaacacaaattcatcatgtactccatcctctgatatttgca |
37599962 |
T |
|
| Q |
283 |
aactcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattc |
368 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| || ||||||| |
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|
| T |
37599963 |
aactctagagatcttcttggtcttgggacacacacccttcaaacacaatcatttctaactggaatcttgaatgtgttaacacattc |
37600048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 37605482 - 37605591
Alignment:
| Q |
174 |
tttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctg |
273 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |
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| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaacac--acacaaattcatcatgcactccatcctctg |
37605579 |
T |
|
| Q |
274 |
atatttgcaaac |
285 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37605580 |
atatttgcaaac |
37605591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 10403887 - 10403972
Alignment:
| Q |
151 |
ttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcaca |
236 |
Q |
| |
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|||||||| || | ||||||||||| || ||||||||||||||||||| |||||||| || ||||||||| |||||| |||||| |
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| T |
10403887 |
ttcttgtatcattcgcaatgttcttcgacgcacaacaatcattcataacaatttacaccgacgattacccaacatggcattgcaca |
10403972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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