View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_25 (Length: 364)
Name: NF17596_low_25
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 28926315 - 28926067
Alignment:
| Q |
16 |
agatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcaggatatttacattgcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926315 |
agatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcaggatatttacattgcc |
28926216 |
T |
|
| Q |
116 |
cgtggcatcgttaaaaatgggaaagacaagcgtgacttggatccatatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaacttta |
215 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926215 |
cgtgacatcgttaaaaatgggaaaaacaagcgtgacttggatccgtatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaacttta |
28926116 |
T |
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| Q |
216 |
taggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
264 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28926115 |
taggatctgattgtgacgacttcgatgaaacgtcaagagttaaatcagt |
28926067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 28917080 - 28916835
Alignment:
| Q |
16 |
agatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcaggatatttacattgcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |||| |||||| |
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| T |
28917080 |
agatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaaaaaaaggaagggtggaattctcaggatgtttatattgcc |
28916981 |
T |
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| Q |
116 |
cgtggcatcgttaaaaatgggaaagacaagcgtgacttggatccatatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaacttta |
215 |
Q |
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| T |
28916980 |
cgtgacatcattaaaaatggaaacatcaagcgtgacttggaaccgtatgaaagaggtgagggggaa---gataccggtgaatctgatgcaagtgacttta |
28916884 |
T |
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| Q |
216 |
taggatctgattgtgacgacttcgatgacacgtcaagagttaaatcagt |
264 |
Q |
| |
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|||| ||||||| ||||||||| | || |||||||||||||||| |||| |
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| T |
28916883 |
taggttctgattctgacgacttggttggcacgtcaagagttaaaccagt |
28916835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 28902665 - 28902435
Alignment:
| Q |
16 |
agatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcaggatatttacattgcc |
115 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||| | |||| |
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| T |
28902665 |
agatatgagagatccagatacaatagaaagttacttttttgaatattatcaagttatcaagaaaaaagaagggctgaattctcaggatgtttatactgcc |
28902566 |
T |
|
| Q |
116 |
cgtggcatcgttaaaaatgggaaagacaagcgtgacttggatccatatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaacttta |
215 |
Q |
| |
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|||| |||| |||||||||| ||| |||| ||||||| |||||||||||||||| ||||||||||| ||||||| ||| |||||| |
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| T |
28902565 |
cgtgacatcattaaaaatggaaaaaacaa---------------atatgaagtaggtgagggggaagacgatactggtgaatctgatgcgagtgacttta |
28902481 |
T |
|
| Q |
216 |
taggatctgattgtgacgacttcgatgacacgtcaagagttaaatc |
261 |
Q |
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|||| ||||||||||| ||||| | || |||||||||||||||||| |
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| T |
28902480 |
taggttctgattgtgatgacttggttggcacgtcaagagttaaatc |
28902435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 28892719 - 28892481
Alignment:
| Q |
17 |
gatatgagagatccagatacagttgaaagttactttttagaatattatcaagttatcaaagaaagagaagggctgaattctcaggatatttacattgccc |
116 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||| | |||| |||||| |
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| T |
28892719 |
gatatgaaagatccagatacacaagaaagttacttttttgattattatcaaattatcaagaaaaaagaagggctgaattctcagcaagtttattttgccc |
28892620 |
T |
|
| Q |
117 |
gtggcatcgttaaaaatgggaaagacaagcgtgacttggatccatatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaactttat |
216 |
Q |
| |
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||| | ||| |||| | ||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||| || |
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| T |
28892619 |
gtgatactattataaatagaaaaaacaagtgtga------tccatatgaaataggtgagggggaagatgataccggtgagtctgatgtcagtaacttcat |
28892526 |
T |
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| Q |
217 |
aggatctgattgtgacgacttcgatgacacgtcaagagttaaatc |
261 |
Q |
| |
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|| ||||||| ||| ||| | ||||| ||| || |||||||||| |
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| T |
28892525 |
agattctgattatgatgacctggatgatacggcaggagttaaatc |
28892481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 28935748 - 28935681
Alignment:
| Q |
179 |
gaagatgatactggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgacac |
246 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||| |
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| T |
28935748 |
gaagatgatgctggtgactctgatgtgagttactttataggttctgattgtgacgacctagatgacac |
28935681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 28925999 - 28925967
Alignment:
| Q |
332 |
gattttgtaggatggggttcaagaagtctcata |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
28925999 |
gattttgtaggatggggttcaagaagtctcata |
28925967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 28935860 - 28935823
Alignment:
| Q |
16 |
agatatgagagatccagatacagttgaaagttactttt |
53 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||| |
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| T |
28935860 |
agatatgaaagatccagatacatttgaaagttactttt |
28935823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 28902361 - 28902329
Alignment:
| Q |
332 |
gattttgtaggatggggttcaagaagtctcata |
364 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
28902361 |
gattttgttggatggggttcaagaagtctcata |
28902329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 28916773 - 28916741
Alignment:
| Q |
332 |
gattttgtaggatggggttcaagaagtctcata |
364 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
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|
| T |
28916773 |
gattttgttggatggggttcaagaagtctcata |
28916741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 34009631 - 34009511
Alignment:
| Q |
98 |
caggatatttacattgcccgtggcatcgttaaaaatgggaaagacaagcgtgacttggatccatatgaaataggtgagggggaagatgatactggtgatt |
197 |
Q |
| |
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|||||| |||| |||||||||| |||| |||| ||| | ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |
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|
| T |
34009631 |
caggatgtttatattgcccgtgacatcattaacaattgaaaaaacaagtgtgacttggatccatatgaagtaggtgagggggaagatgatactggtgaat |
34009532 |
T |
|
| Q |
198 |
ctgatgtgagcaactttatag |
218 |
Q |
| |
|
|||||||||| ||||||||| |
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|
| T |
34009531 |
ctgatgtgagtgactttatag |
34009511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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