View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_29 (Length: 343)
Name: NF17596_low_29
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 36373314 - 36373001
Alignment:
| Q |
1 |
accgatcttatgacatatgaaaccttatttaacgatgacgcggtaacaaaccaggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggca |
100 |
Q |
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| T |
36373314 |
accgatcttatgacatatgaaaccttctttaacgatgacgcggtaacaaaccgggaaagatcagacaaaaacttcccgaaaagtagtcttgattgtggca |
36373215 |
T |
|
| Q |
101 |
atgaagagcagtcttcggatgaatcccacatataaagattaacttttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttg |
200 |
Q |
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| T |
36373214 |
atgaagagcagtcttcggatgaatcccacatataaagattaaattttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttg |
36373115 |
T |
|
| Q |
201 |
caggatgctaatttgcttaataccaatcacactaacatctttcttcagagttcttatctctgtatcaactgaatcttgatcattatagaaatttacatga |
300 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | | |
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| T |
36373114 |
gaggatgctaatttgcttaataccaatcacactaacctctttcttcagagttcttatctctgtaccaactgaatcttgatcattataaaaatttacttta |
36373015 |
T |
|
| Q |
301 |
aactgacatgaaca |
314 |
Q |
| |
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||| |||||||||| |
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| T |
36373014 |
aaccgacatgaaca |
36373001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 46 - 314
Target Start/End: Original strand, 32252615 - 32252883
Alignment:
| Q |
46 |
acaaaccaggaaagatcagacaaaaacttcccgtaaagtagtcttgattgtggcaatgaagagcagtcttcggatgaatcccacatataaagattaactt |
145 |
Q |
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| T |
32252615 |
acaaaccacgaaagatcagatgaaaatttcccaacaagtaatctagattgtgataatgaagagcaatcttctgatgaatcccacctataaggcttaattt |
32252714 |
T |
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| Q |
146 |
ttgaactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatgctaatttgcttaataccaatcacactaacatctttctt |
245 |
Q |
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|| ||||||||||| ||||| | |||||||||||||| ||||||| ||||| |||||| |||||| | || ||||| || |||| ||||| || |
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| T |
32252715 |
cagaggtatcattttcttttaacaagccttcacaagtattatgttgaagcctttggaggatgaaaatttgatccattccaattgcattaacctctttatt |
32252814 |
T |
|
| Q |
246 |
cagagttcttatctctgtatcaactgaatcttgatcattatagaaatttacatgaaactgacatgaaca |
314 |
Q |
| |
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|||||| ||| ||||||| ||| |||| ||||||| | ||| || ||||||| ||| ||||||||||| |
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| T |
32252815 |
aagagtttttacctctgtaccaagtgaaccttgatcgtcataaaagtttacataaaattgacatgaaca |
32252883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 325
Target Start/End: Complemental strand, 11415885 - 11415710
Alignment:
| Q |
149 |
aactatcattttctcttaacgatccttcacaagtatttcgttgaagtctttgcaggatgctaatttgcttaataccaatcacactaacatctttcttcag |
248 |
Q |
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|||||||| ||| ||||||| ||| |||||| |||||| ||| ||||||||| |||||| |||||| | || ||||| ||| | || ||||| ||||| |
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| T |
11415885 |
aactatcagttt-tcttaacaatctttcacatgtattttgttaaagtctttggaggatgaaaatttgatatattccaattacattgacctctttattcag |
11415787 |
T |
|
| Q |
249 |
agttcttatctctgtatcaactgaatcttgatcattatagaaatttacatgaaactgacatgaacagttatcagatt |
325 |
Q |
| |
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|||| ||| || |||| ||| |||| ||||||||| ||||||||||||||||| ||||||||| | | |||||||| |
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| T |
11415786 |
agtttttaactttgtaccaagtgaaccttgatcatcgtagaaatttacatgaaattgacatgaatattgatcagatt |
11415710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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