View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_33 (Length: 330)
Name: NF17596_low_33
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 55175466 - 55175145
Alignment:
| Q |
1 |
tttttcaaaatgcaaattttggctttcatccattctcatccaatttatcaatggcttttctgaattaatctctttaggaacaatggcttcagtatcatca |
100 |
Q |
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| T |
55175466 |
tttttcaaaatgcaaattttggctttcatccattctcatccaatttatcaatggcttttctgaattaatctctttaggaacaatggcttcagtattgtca |
55175367 |
T |
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| Q |
101 |
ggcctgtactcacttttgaaaatattcatattctctatttcatcatccaccatttcattctttttccttttgaaattcttgaagcttcttgcaacagcat |
200 |
Q |
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| T |
55175366 |
ggcttgtactcacttttgaaaatattcatattctctatttcatcatccaccatttcattctttttccttttgaaattcttgaagcttcttgcaacagcat |
55175267 |
T |
|
| Q |
201 |
gctgattattttcctgatatgacggttaagttttttacttttaatgagagnnnnnnncagatgaaaactacaacaatcagggaacataaattaaatagga |
300 |
Q |
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| T |
55175266 |
gctgattattttcctgatatgacggttaagttttttacttttaatgagagaaaaaaacagatgaaaactacaacaatcagggaacataaattaaatagga |
55175167 |
T |
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| Q |
301 |
ataatgataatatagttgatga |
322 |
Q |
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| T |
55175166 |
ataatgataatatagttgatga |
55175145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 50907256 - 50907166
Alignment:
| Q |
92 |
gtatcatcaggcctgtactcacttttgaaaatattcatattctctatttcatcatccaccatttcattctttttccttttgaaattcttga |
182 |
Q |
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| T |
50907256 |
gtatcatcaggcttgtactcacttttgaaaatattcatattctctattacatcgtccaccatttcattcattttccttttgaaattcttga |
50907166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 50907120 - 50907069
Alignment:
| Q |
261 |
atgaaaactacaacaatcagggaacataaattaaataggaataatgataata |
312 |
Q |
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| T |
50907120 |
atgaaaagtacgacaatcagggaacataaattaaatagaaataatgataata |
50907069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 17204515 - 17204424
Alignment:
| Q |
91 |
agtatcatcaggcctgtactcacttttgaaaatattcatattctctatttcatcatccaccatttcattctttttccttttgaaattcttga |
182 |
Q |
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| T |
17204515 |
agtatcttcaggcttgtactcacgtttgaaaatattcatattctctgttacatcatttaccatttcattcgttttccttttgaaattcttga |
17204424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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