View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_34 (Length: 324)
Name: NF17596_low_34
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 44729899 - 44729612
Alignment:
| Q |
1 |
ctagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtaggcaatt |
100 |
Q |
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| T |
44729899 |
ctagtttgcagataaatgaagaagagaggtttaatttttgtgagtttttgccagaaatgatggaggaaagagcagagtatttgaatttgagtaggcaatt |
44729800 |
T |
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| Q |
101 |
atcagggaaagggtggaagcctagcttggataccattaaggaaaagaaggttaagagaaagatatctggttggttattccttacaagttttattggtgca |
200 |
Q |
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| T |
44729799 |
atcagggaaagggtggaagcctagcttggatacaattaaggaaaagaaggttaagagaaagatatctggttggttattccttacaagttttattggtgca |
44729700 |
T |
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| Q |
201 |
aagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttggttttaattgttagttatgttatattggcacttctg |
288 |
Q |
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| T |
44729699 |
aagatttgatcaataatatggtcaaattagtgaaagttgttggtttaagttggttttaattgttagttatgttatattggcacttctg |
44729612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 39084251 - 39084314
Alignment:
| Q |
85 |
atttgagtaggcaattatcagggaaagggtggaagcctagcttggataccattaaggaaaagaa |
148 |
Q |
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|||||| |||||| | |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
39084251 |
atttgaataggcagatttcagggaaagggtggaagcctagcttggatactattaaggagaagaa |
39084314 |
T |
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