View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_35 (Length: 322)
Name: NF17596_low_35
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 309
Target Start/End: Complemental strand, 1460908 - 1460621
Alignment:
| Q |
22 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
121 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460908 |
atagccatagtgacagacaaaacagttggcattgcaattggaattccacctatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
1460809 |
T |
|
| Q |
122 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460808 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatacagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
1460709 |
T |
|
| Q |
222 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttc |
309 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1460708 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttc |
1460621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 1498428 - 1498715
Alignment:
| Q |
22 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
121 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1498428 |
atagccatagtgacagacaaaacagttggcattgcaattggaattccaccaatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
1498527 |
T |
|
| Q |
122 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
221 |
Q |
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|||||||||||||||| |||| ||||| | |||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
1498528 |
gtatcggatacatcactataagctcaaccaatattccaatagcgattgaacaaatgcagaagtttccaattgctgtaagcactttctgaaagtgtccaac |
1498627 |
T |
|
| Q |
222 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttc |
309 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||| |||||||| || || |||||||| ||| |||| ||||||||||||||||||| |
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|
| T |
1498628 |
ttgattagtactatcaaccaaatgagccgctttaccgaaaaaagtatgcacaccagtagcaataacaactgcttcaatctcacccttc |
1498715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 309
Target Start/End: Complemental strand, 26788477 - 26788190
Alignment:
| Q |
22 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
121 |
Q |
| |
|
||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |||| |
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|
| T |
26788477 |
atagccatagtaacagataatacagttggcattgcaattggaattccaccgatcaagagcaccaaaagattatcaattccatctctatagttgcgatgtt |
26788378 |
T |
|
| Q |
122 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
221 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26788377 |
gtatcggatacatcacaataatctcaacgagtattccaactgcaattgaacagatgcagaaatttccaattgctgtaagcactttttgaaagtgtccaac |
26788278 |
T |
|
| Q |
222 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacccttc |
309 |
Q |
| |
|
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
26788277 |
ttgattagtactgtcaaccaaatgagctgcttttccgaaaaaggtgtggacaccagttgcatacacaattgcttcgatctcacccttc |
26788190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 22 - 305
Target Start/End: Complemental strand, 50274725 - 50274442
Alignment:
| Q |
22 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
121 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| || |||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
50274725 |
atagccatagtaacagacaaaacagttggcatagcaattggaattcctccaatcaatagaaccaaaagattgtcaattccgtctctatacttgcggtgtt |
50274626 |
T |
|
| Q |
122 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtccaac |
221 |
Q |
| |
|
||||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || |||| |||||||| ||||| |
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| T |
50274625 |
gtatcggatacatgacaacgagttcaatcagtattccaacagcaattgagcaaatgcagaaattaccaattgctgttaggactttctgaaagtgaccaac |
50274526 |
T |
|
| Q |
222 |
ttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgcatacacaattgcttcaatctcacc |
305 |
Q |
| |
|
||| || || || |||||||||||||| ||||| || ||||| ||||| || ||||| ||| |||| ||||||||||||||| |
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|
| T |
50274525 |
ttgattggtgctgtcaaccaaatgagcagctttaccaaaaaatgtgtgcactccagtagcaattacaactgcttcaatctcacc |
50274442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 53076898 - 53077160
Alignment:
| Q |
20 |
cgatagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtg |
119 |
Q |
| |
|
|||| ||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |
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| T |
53076898 |
cgatggccattgttacagacaacacagtaggcatagcaatgggaattcctccgatcaaaaggaccaaaagattgtcaattccatctctgtacttgcggtg |
53076997 |
T |
|
| Q |
120 |
ttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgctgtaagcacttgttgaaagtgtcca |
219 |
Q |
| |
|
|| || || ||||| || || |||||| | || ||||| ||||| |||||||||||||| ||||||||||| |||||||| | ||||| || ||| |
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|
| T |
53076998 |
ctgaattgggtacatgactatgatctcagccaacataccaactgcaatcgaacaaatgcagaagtttccaattgcagtaagcaccttctgaaaatgccca |
53077097 |
T |
|
| Q |
220 |
acttggttagtactatcaaccaaatgagctgctttgccgaaaaaggtgtggacaccagttgca |
282 |
Q |
| |
|
|||||||| ||||| || || | ||||||||||| |||||||| |||||||||||||||||| |
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|
| T |
53077098 |
acttggttggtactgtccacaaggtgagctgctttcccgaaaaatgtgtggacaccagttgca |
53077160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 15867629 - 15867456
Alignment:
| Q |
22 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
121 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||||| || ||||| ||||||||||| || | ||| |||||||||| |
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|
| T |
15867629 |
atagccattgtcacagacaaaacagttggcatagcaataggaattcctccgatcaaaaggactaaaaggttgtcgattccttcacgatatttgcggtgtt |
15867530 |
T |
|
| Q |
122 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattgct |
195 |
Q |
| |
|
| ||||||||||| || || |||||| | || ||||| ||||| |||||||| || || |||||||||||| |
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|
| T |
15867529 |
ggatcggatacatgactatgatctcagccaacataccaactgcaatggaacaaatacaaaagtttccaattgct |
15867456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 45199046 - 45199206
Alignment:
| Q |
22 |
atagccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgtt |
121 |
Q |
| |
|
|||||||| || || ||||| || || ||||||||||| ||||| || || || | ||||||||| |||||||| |||||| |||||||||||| | | |
|
|
| T |
45199046 |
atagccattgtcactgacaacactgttggcattgcaataggaatccctccaatgagaagcaccaatagattgtcaattccactcctatacttgcggcgct |
45199145 |
T |
|
| Q |
122 |
gtatcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaa |
182 |
Q |
| |
|
| ||||||||||| |||| |||||| |||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
45199146 |
gaatcggatacatgacaacaatctcgatgaccattcccacagcaattgagcaaatgcagaa |
45199206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 3153415 - 3153247
Alignment:
| Q |
25 |
gccatagtgacagacaaaacagtaggcattgcaattggaattccaccgatcaaaagcaccaaaagattgtcgattccatctctatacttgcggtgttgta |
124 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||| ||||||||||| || | |||||| | ||||||||||||||| | ||| || | |||||| | |
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|
| T |
3153415 |
gccattgtgactgacaaaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcctgtgttgaa |
3153316 |
T |
|
| Q |
125 |
tcggatacatcacaataatctcaatgagtattccaacagcaattgaacaaatgcagaaatttccaattg |
193 |
Q |
| |
|
| |||||||| ||||| ||||||| | ||||||| |||||||||||| ||||| || || ||||||| |
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|
| T |
3153315 |
ttggatacatgacaatgatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattg |
3153247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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