View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_41 (Length: 296)

Name: NF17596_low_41
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_41
NF17596_low_41
[»] chr2 (1 HSPs)
chr2 (1-277)||(5763821-5764097)
[»] chr8 (2 HSPs)
chr8 (92-145)||(8402285-8402338)
chr8 (99-145)||(39165052-39165098)
[»] chr4 (2 HSPs)
chr4 (99-144)||(46206660-46206705)
chr4 (101-144)||(53456942-53456985)
[»] chr1 (2 HSPs)
chr1 (99-147)||(32635212-32635260)
chr1 (65-147)||(32660867-32660950)
[»] chr7 (1 HSPs)
chr7 (86-144)||(6428199-6428257)
[»] chr5 (2 HSPs)
chr5 (30-75)||(12974530-12974575)
chr5 (58-145)||(16263768-16263856)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 5764097 - 5763821
Alignment:
Q  1 cccttattaatattatgactatgttgtcaccgtgagcatagctcagttcacaggaacattgtagtatgcaggggcaggggtcaaaccctagattccctac 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5764097 cccttattaatattatgacaatgttgtcaccgtgagcatagctcagttgacaagaacattgtagtatgcaggggcaggggtcaaaccctagattccctac 5763998  T
Q  101 ttattcaccttaagaggtaaatttctagtcaatatgctacttgacaatataaacacatcatgacaatgttgcaattattaaattgtgaccgttgtgttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5763997 ttattcaccttaagaggtaaatttctagtcaatatgctacttgacaaaataaacacatcatgacaatgttgcaattattaaattgtgaccgttgtgttgc 5763898  T
Q  201 ggttttactgtaaaccttaatattgctagcaaatgtggtcgatatgaccacaattgctgttgtgatgtgattgtaaa 277  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||    
T  5763897 ggttttactgtaaaccttaatattgctagcaaatgcggtcgatatgaccacaattgcggttgcgatatgattgtaaa 5763821  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 8402338 - 8402285
Alignment:
Q  92 attccctacttattcaccttaagaggtaaatttctagtcaatatgctacttgac 145  Q
    |||||| |||||||||||||||||||| ||||||||| || || ||||||||||    
T  8402338 attccccacttattcaccttaagaggtgaatttctagccactaggctacttgac 8402285  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 39165052 - 39165098
Alignment:
Q  99 acttattcaccttaagaggtaaatttctagtcaatatgctacttgac 145  Q
    |||||||||||||||||||| ||||||||| || || ||||||||||    
T  39165052 acttattcaccttaagaggtgaatttctagccactaggctacttgac 39165098  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 46206660 - 46206705
Alignment:
Q  99 acttattcaccttaagaggtaaatttctagtcaatatgctacttga 144  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||    
T  46206660 acttattcaccttaagaggtgaatttctagccactatgctacttga 46206705  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 53456942 - 53456985
Alignment:
Q  101 ttattcaccttaagaggtaaatttctagtcaatatgctacttga 144  Q
    |||||||||||||||||| ||||| |||||| ||||||||||||    
T  53456942 ttattcaccttaagaggttaatttatagtcactatgctacttga 53456985  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 32635212 - 32635260
Alignment:
Q  99 acttattcaccttaagaggtaaatttctagtcaatatgctacttgacaa 147  Q
    |||||||||||||||||||| ||||||||| || || ||||||||||||    
T  32635212 acttattcaccttaagaggtgaatttctagccactaggctacttgacaa 32635260  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 32660867 - 32660950
Alignment:
Q  65 tatgcaggggcaggggt-caaaccctagattccctacttattcaccttaagaggtaaatttctagtcaatatgctacttgacaa 147  Q
    ||||||||||| ||||| |||||||  ||  ||| |||| ||||||||||||||| ||||||||| || || ||||||||||||    
T  32660867 tatgcaggggctggggttcaaaccccggacaccccactttttcaccttaagaggtgaatttctagccactaggctacttgacaa 32660950  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 6428199 - 6428257
Alignment:
Q  86 ccctagattccctacttattcaccttaagaggtaaatttctagtcaatatgctacttga 144  Q
    |||| ||||| | |||||||||||||||| ||| ||||||||| || ||||||||||||    
T  6428199 ccctggattctccacttattcaccttaaggggtgaatttctagccactatgctacttga 6428257  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 12974530 - 12974575
Alignment:
Q  30 ccgtgagcatagctcagttcacaggaacattgtagtatgcaggggc 75  Q
    ||||||||||||||||||| ||||| |||||| ||| |||||||||    
T  12974530 ccgtgagcatagctcagttaacagggacattgcagtttgcaggggc 12974575  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 16263768 - 16263856
Alignment:
Q  58 attgtagtatgcaggggcaggggt-caaaccctagattccctacttattcaccttaagaggtaaatttctagtcaatatgctacttgac 145  Q
    |||| ||||||||||||| ||||| | |||||  ||||||| |||||||||||||||  ||| ||||||||| || || |||| |||||    
T  16263768 attgcagtatgcaggggccggggttctaaccccggattccccacttattcaccttaaagggtgaatttctagccactacgctaattgac 16263856  T

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