View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_42 (Length: 294)

Name: NF17596_low_42
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_42
NF17596_low_42
[»] chr7 (14 HSPs)
chr7 (10-275)||(4711592-4711857)
chr7 (10-275)||(4637167-4637432)
chr7 (10-274)||(4673014-4673278)
chr7 (10-275)||(4696710-4696975)
chr7 (10-274)||(4864233-4864500)
chr7 (10-272)||(4783355-4783617)
chr7 (10-272)||(4815784-4816046)
chr7 (10-275)||(4845532-4845797)
chr7 (10-146)||(4653935-4654071)
chr7 (95-274)||(4667252-4667431)
chr7 (96-275)||(4631237-4631416)
chr7 (92-275)||(4644017-4644200)
chr7 (10-64)||(4644216-4644270)
chr7 (10-64)||(4631451-4631505)
[»] chr4 (1 HSPs)
chr4 (25-166)||(18925280-18925418)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 4711592 - 4711857
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711592 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 4711691  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711692 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 4711791  T
Q  210 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacca 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711792 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacca 4711857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 4637432 - 4637167
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    ||||||||||||| ||||||||||||||||| ||| ||| ||||||||||||||| |||| |||||| || |||||||||| ||||||||| ||||||||    
T  4637432 aagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgg 4637333  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 209  Q
     |||||| ||||||| |||||||||||||||||||||||  |||| ||||||||||| |||  ||||||| || ||||||  ||  |||||||||||| |    
T  4637332 gatcgaagttgtgtcaatgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagtacacggaataccga 4637233  T
Q  210 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacca 275  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4637232 attcataaagacaaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccacca 4637167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 4673278 - 4673014
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    |||||| ||| || |||||||| || ||||||||||||| ||||| ||||||||||| || ||| ||  | ||||||  | | |||||||||||||||||    
T  4673278 aagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacgg 4673179  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 209  Q
    ||||||||||||||| |||||||||||||||||||||||  |||| | ||||||||| || | |||||||||||||||||| ||||||||||||||||||    
T  4673178 aatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaacacggaataccaa 4673079  T
Q  210 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacc 274  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  4673078 attcataacgaaaaagctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccacc 4673014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 4696710 - 4696975
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||    
T  4696710 aagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacgg 4696809  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 209  Q
    ||| ||| ||||||| |||||||||||||||||||||||  |||| | |||||||||||| | ||||| |||||||||||| ||||||| ||| ||||||    
T  4696810 aatagaagttgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaaatatcatttgatatcacttgacttagacaacagggactaccaa 4696909  T
Q  210 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacca 275  Q
     ||| |||||||||||| || || | ||| ||||||||||| || |||   |||||||||||||||    
T  4696910 gttcttaacgacaaagcgttagagacggtttatagagtcaatgtgggtggcaatcaagttccacca 4696975  T

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Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 4864500 - 4864233
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttattatgctttcattaa 106  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    || || |||||||| ||||||||||||||||| ||||||||    
T  4864500 aagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcattaa 4864401  T
Q  107 cggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaatac 206  Q
     ||||| ||| | |||||||||||||||||||| ||||||||  |||| ||||||||||||||   |||||||||||||||||||||||||||| | |||    
T  4864400 tggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacgaactac 4864301  T
Q  207 caaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacc 274  Q
    ||| ||| |||||||||||| || || | ||| ||||||||||| || ||| ||| ||||||||||||    
T  4864300 caagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccacc 4864233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 4783355 - 4783617
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    ||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||||    
T  4783355 aagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaacgg 4783454  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 209  Q
    ||||||| |||||||||||||||||||||||||||||||  |||| | ||||| | | || ||| | || | || ||  |||||||||||||| || |||    
T  4783455 aatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggattatcaa 4783554  T
Q  210 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttcca 272  Q
     ||| |||| |||||||||| || | ||| |||||||||||||||||||||||||||||||||    
T  4783555 gttcttaactacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttcca 4783617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 4815784 - 4816046
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    ||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||||    
T  4815784 aagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaacgg 4815883  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 209  Q
    ||||||| |||||||||||||||||||||||||||||||  |||| | ||||| | | || | | | || | || ||  | |||||||||||||||||||    
T  4815884 aatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaataccaa 4815983  T
Q  210 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttcca 272  Q
     ||| |||| |||||||||| || | ||| |||||||||||||||||||||||||||||||||    
T  4815984 gttcttaacaacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttcca 4816046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 4845532 - 4845797
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    |||||||||||||||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||  | |  ||||||| |||||||||| |||||||    
T  4845532 aagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaacgg 4845631  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgacaacacggaataccaa 209  Q
    ||||||| ||||||| |||||||||||||||||||||||  |||   |||||  ||| ||   ||| |||| | ||| |||||||||||  |||||| ||    
T  4845632 aatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacagagaatacgaa 4845731  T
Q  210 attcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacca 275  Q
    |||| ||| || ||||||||||| ||||| ||||||||||| |||||| |||||||||||| ||||    
T  4845732 attcgtaatgataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaacca 4845797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 4654071 - 4653935
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacgg 109  Q
    ||||||||||||| ||| || |||| ||| ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||    
T  4654071 aagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaatgg 4653972  T
Q  110 aatcgaaattgtgtctatgccttcttttctctattac 146  Q
    ||| ||| |||||||||||||||||||||||||||||    
T  4653971 aattgaagttgtgtctatgccttcttttctctattac 4653935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 95 - 274
Target Start/End: Complemental strand, 4667431 - 4667252
Alignment:
Q  95 tgctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgac 194  Q
    ||||||||| |||||||| || |||||||||||||| |||||||||||||||||  |||| | ||||||||| || | ||||| || |||||||||||||    
T  4667431 tgctttcatcaacggaattgagattgtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcatttgacattacttgactttgac 4667332  T
Q  195 aacacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacc 274  Q
    | ||  |||||||| |||| |||| |||||||| |||| | ||| |||||||||| ||||||| ||| ||||||||||||    
T  4667331 agcaatgaataccatattcctaacaacaaagctatggagacggtttatagagtcagcgttggtgaaagtcaagttccacc 4667252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 275
Target Start/End: Complemental strand, 4631416 - 4631237
Alignment:
Q  96 gctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgaca 195  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||  | || | |||| | || |||| ||| ||   |||||| |||||||    
T  4631416 gctttcatcaacggaattgagattgtgtctatgccttcttttctctattacactaatctcagtgacacgaactaccatttaaagatacttgattttgaca 4631317  T
Q  196 acacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacca 275  Q
     |   |||||||| |||| |||| |||||||| ||||||  || ||||||||||||| |||| |||||||||||||||||    
T  4631316 gcggtgaataccagattcttaacaacaaagctatggaaacagtttatagagtcaacgctggtgaaaatcaagttccacca 4631237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 275
Target Start/End: Complemental strand, 4644200 - 4644017
Alignment:
Q  92 ttatgctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgacttt 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||| | ||||| | | || | | | || | |  || || |    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcgtatcaagttagatggctct 4644101  T
Q  192 gacaacacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccacca 275  Q
    ||  | |    ||||||||||| ||| |||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||    
T  4644100 gaagatataccataccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccacca 4644017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 4644270 - 4644216
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 64  Q
    |||| |||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  4644270 aagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc 4644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 4631505 - 4631451
Alignment:
Q  10 aagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 64  Q
    ||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4631505 aagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 18925280 - 18925418
Alignment:
Q  25 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 124  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
T  18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
Q  125 tatgccttcttttctctattacacggaccttaatgacccaaa 166  Q
     |||||||||||||||||||||||  |||| |||||| ||||    
T  18925377 catgccttcttttctctattacacaaacctcaatgactcaaa 18925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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