View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_43 (Length: 293)
Name: NF17596_low_43
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_43 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 56232433 - 56232715
Alignment:
| Q |
11 |
cacagaattggactttgataaacgtagggttcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaag |
110 |
Q |
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| T |
56232433 |
cacagaattggactttgataaacgtagggttcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaag |
56232532 |
T |
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| Q |
111 |
actctccaccccaactggagtccatccgctattaaatctgcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatg |
210 |
Q |
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| T |
56232533 |
actctccaccccaactggagtccatccgctattaaatctgcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattatgatatg |
56232632 |
T |
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| Q |
211 |
attcattgagaattactctatctgataatatgatgtgttttctttcagctaggacaagggacaacactcataaacctatcctc |
293 |
Q |
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| T |
56232633 |
attcattgagaattactctatctgataatatgatgtgttttctttcagctaggacaagggacaacactcacaaacctatcctc |
56232715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 42761348 - 42761220
Alignment:
| Q |
41 |
tcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaagactctccaccccaactggagtccatccgct |
140 |
Q |
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|||||| ||||| ||||| || || || ||||||||||||||||| || ||| ||||||| || ||||| || |||| || | ||||||||| | ||| |
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| T |
42761348 |
tccttttattactatgtcaggcacttcgatgtcatgtcctcatgttgccggacttgttgggctgcttaaatctatccatcctgattggagtccagctgct |
42761249 |
T |
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| Q |
141 |
attaaatctgcaatcatgacaactggtaa |
169 |
Q |
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| T |
42761248 |
atcaagtcagcaatcatgactacaggtaa |
42761220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 39190248 - 39190449
Alignment:
| Q |
11 |
cacagaattggactttgataaacgtagggttcctttcattaccatgtctggaacatccatgtcatgtcctcatgtggctggagttgttggccttcttaag |
110 |
Q |
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|||| ||||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
39190248 |
cacaaaattggattctgataaacgtagggttcctttcatgacaatgtctggaacatccatgtcatgccctcatgtggctggagtcgttggccttcttaag |
39190347 |
T |
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| Q |
111 |
actctccaccccaactggagtccatccgctattaaatctgcaatcatgacaactggtaagttacctaacaccgttaggttactcatggaattattatatg |
210 |
Q |
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| T |
39190348 |
actctccaccccacctggagtccatcagctattaaatctgcaatcatgacaactggtaagtaatgtaacatcattagattactcatgaaatgatgatatg |
39190447 |
T |
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| Q |
211 |
at |
212 |
Q |
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|| |
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| T |
39190448 |
at |
39190449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 39190602 - 39190659
Alignment:
| Q |
233 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactcataaacctatc |
290 |
Q |
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| T |
39190602 |
tgataatatgatgtgttttctttcagctaggacaagggacaacactgttaaacctatc |
39190659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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