View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_48 (Length: 268)
Name: NF17596_low_48
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 24182533 - 24182287
Alignment:
| Q |
9 |
gagatgaactgataatannnnnnngagaggagttgaattgatagtgtattattcttttgttacgtagagctaggagtgtacacatttttcggttatgagg |
108 |
Q |
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| T |
24182533 |
gagatgaactgataatatttttttgagaggagttgaattgatggtgtattattcttttgttacgtagagctaggagtgtacacatttttcggttatgagg |
24182434 |
T |
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| Q |
109 |
caagcagtagaaatagtagaaatcaattatgcctccaaaaagcaagatgattgatctttagtcaaa--atcgacaaatttaaccaaataattagattcaa |
206 |
Q |
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| T |
24182433 |
caggcagtagaaatagtagaaatcaattatgcctccaaaaagcaagatgattgatctttagtcaaaagatcgataaatttaaccaaataattagactcaa |
24182334 |
T |
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| Q |
207 |
gtggttaataaactccactaaataacaaattgttcggtagaatctga |
253 |
Q |
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| T |
24182333 |
gtggttaataaactccattaaatgacaaattgttcggtagaacctga |
24182287 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 5529812 - 5529861
Alignment:
| Q |
185 |
ttaaccaaataattagattcaagtggttaataaactccactaaataacaa |
234 |
Q |
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| T |
5529812 |
ttaactaaataattagattcaagtggttaatgagctccaccaaataacaa |
5529861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 38712759 - 38712705
Alignment:
| Q |
186 |
taaccaaataattagattcaagtggttaataaactccactaaataacaaattgtt |
240 |
Q |
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| T |
38712759 |
taactaaacaattagctttaagtggttaataaactctactaaataataaattgtt |
38712705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 29846614 - 29846658
Alignment:
| Q |
186 |
taaccaaataattagattcaagtggttaataaactccactaaata |
230 |
Q |
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| T |
29846614 |
taaccaagtaattaaactcaagtggttaataaacttcactaaata |
29846658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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