View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17596_low_51 (Length: 254)
Name: NF17596_low_51
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 45362823 - 45363042
Alignment:
| Q |
16 |
agagaggggaggaaggtggagcaaaaacgatgccaccagcaagtataatgacgaggctgatattgataatggtttggagaaaacttatcagaaacccaaa |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45362823 |
agagaggggaggaaggtggggcaaaaacgatgccaccagcaagtataatgacgaggctgatattgataatggtttggagaaaacttatcagaaacccaaa |
45362922 |
T |
|
| Q |
116 |
cacatattcgagcattatcggcctaacttggtcactcatttcattcaggtggaatattgaaatgcctgttatcatagaaaagtctatttccatattgtca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45362923 |
cacatattcgagcattatcggcctaacttggtcactcatttcattcaggtggaatattgaaatgcctgttatcatagcaaagtctatttccatattgtcg |
45363022 |
T |
|
| Q |
216 |
gatgcagggcttggcatggc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45363023 |
gatgcagggcttggcatggc |
45363042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 25040218 - 25040338
Alignment:
| Q |
45 |
atgccaccagcaagtataatgacgaggctgatattgataatggtttggagaaaacttatcagaaacccaaacacatattcgagcattatcggcctaactt |
144 |
Q |
| |
|
||||||||||| ||| | ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| | || || || |||| |
|
|
| T |
25040218 |
atgccaccagctagtgtgatgacaaggcttatattgattatggtttggagaaaacttatcagaaatccaaacacttattctagcttaattggtctcactt |
25040317 |
T |
|
| Q |
145 |
ggtcactcatttcattcaggt |
165 |
Q |
| |
|
|||| | |||||||||||| |
|
|
| T |
25040318 |
ggtctttggtttcattcaggt |
25040338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 25040700 - 25040767
Alignment:
| Q |
169 |
atattgaaatgcctgttatcatagaaaagtctatttccatattgtcagatgcagggcttggcatggct |
236 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
25040700 |
atattgaaatgcctgccattatagcaaagtctatttccattctgtcagatgcaggacttggcatggct |
25040767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University