View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_52 (Length: 253)

Name: NF17596_low_52
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_52
NF17596_low_52
[»] chr3 (3 HSPs)
chr3 (15-151)||(43485259-43485395)
chr3 (98-146)||(33309986-33310033)
chr3 (74-146)||(54141377-54141448)
[»] chr4 (6 HSPs)
chr4 (79-145)||(5521525-5521590)
chr4 (96-144)||(38834067-38834114)
chr4 (74-146)||(51203221-51203292)
chr4 (98-144)||(11692153-11692198)
chr4 (41-79)||(38812246-38812284)
chr4 (38-79)||(20097474-20097515)
[»] chr5 (3 HSPs)
chr5 (96-145)||(26032249-26032297)
chr5 (98-146)||(38446007-38446054)
chr5 (74-146)||(40972136-40972207)
[»] chr2 (5 HSPs)
chr2 (38-79)||(22963424-22963465)
chr2 (38-79)||(22998012-22998053)
chr2 (98-146)||(17642640-17642687)
chr2 (98-146)||(35652128-35652175)
chr2 (98-146)||(35665327-35665374)
[»] chr8 (2 HSPs)
chr8 (98-146)||(23757617-23757665)
chr8 (74-147)||(22210250-22210322)
[»] chr7 (4 HSPs)
chr7 (74-150)||(2145921-2145996)
chr7 (41-79)||(3953755-3953793)
chr7 (99-147)||(25245011-25245058)
chr7 (98-146)||(30219067-30219114)
[»] chr6 (1 HSPs)
chr6 (30-79)||(19631773-19631818)
[»] chr1 (1 HSPs)
chr1 (30-71)||(34491484-34491525)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 43485395 - 43485259
Alignment:
Q  15 atgaattaaatatgaaaatgttcaatgattggtcatagaattaacttcaccagaaaagtcattctattttatttttgaaatattaaaattaaaattcgct 114  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  43485395 atgaattaaatatgaaaatgttcaatgattggtcataggattaacttcaccagaaaagtcattctattttatttttgaaggattaaaattaaaattcgct 43485296  T
Q  115 atattatatagggaagaaaaacttatttaacctattt 151  Q
    |||||||||||||||||||||||||||||||||||||    
T  43485295 atattatatagggaagaaaaacttatttaacctattt 43485259  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 33309986 - 33310033
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    |||||| |||||||||||||| || ||||||||||||||||||||||||    
T  33309986 taaaataaaaattcgctatat-atttagggaagaaaaacttatttaacc 33310033  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 54141448 - 54141377
Alignment:
Q  74 cattctattttatttttgaaatattaaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    ||||| ||||||||||| ||  | || ||| ||||||||||||||| | || |||||||||||||||||||||    
T  54141448 cattcaattttattttttaagaactacaatcaaaattcgctatatttt-tatggaagaaaaacttatttaacc 54141377  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 5521525 - 5521590
Alignment:
Q  79 tattttatttttgaaatattaaaattaaaattcgctatattatatagggaagaaaaacttatttaac 145  Q
    |||||||||||| ||  | |||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  5521525 tattttattttttaaggactaaaatcaaaattcgctatatt-tatagggacgaaaaacttatttaac 5521590  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 38834067 - 38834114
Alignment:
Q  96 attaaaattaaaattcgctatattatatagggaagaaaaacttatttaa 144  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  38834067 attaaaattaaaattcgttatatttt-tagggaagaaaaacttatttaa 38834114  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 51203292 - 51203221
Alignment:
Q  74 cattctattttatttttgaaatattaaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    ||||||||||||||||| |   | |||||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  51203292 cattctattttattttttagggactaaaatcaaaattcgcaatatt-tatagggacgaaaaacttatttaacc 51203221  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 11692198 - 11692153
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaa 144  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||||    
T  11692198 taaaatcaaaattcgctatatt-tatagggatgaaaaacttatttaa 11692153  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 38812246 - 38812284
Alignment:
Q  41 gattggtcatagaattaacttcaccagaaaagtcattct 79  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  38812246 gattagtcataggattaacttcaccagaaaagtcattct 38812284  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 20097474 - 20097515
Alignment:
Q  38 aatgattggtcatagaattaacttcaccagaaaagtcattct 79  Q
    |||||||| ||||||  |||||||||||||||||||||||||    
T  20097474 aatgattgatcatagggttaacttcaccagaaaagtcattct 20097515  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 26032297 - 26032249
Alignment:
Q  96 attaaaattaaaattcgctatattatatagggaagaaaaacttatttaac 145  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  26032297 attaaaatcaaaattcgctatatt-tatagggacgaaaaacttatttaac 26032249  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 38446007 - 38446054
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    |||||| |||||||||| |||| |||||||| |||||||||||||||||    
T  38446007 taaaatcaaaattcgctgtatt-tatagggatgaaaaacttatttaacc 38446054  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 40972136 - 40972207
Alignment:
Q  74 cattctattttatttttgaaatattaaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    ||||||||||||||||| |   | |||||| |||||||| |||||| |||||||| |||||| ||||||||||    
T  40972136 cattctattttattttttagggactaaaatcaaaattcgttatatt-tatagggatgaaaaaattatttaacc 40972207  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 22963465 - 22963424
Alignment:
Q  38 aatgattggtcatagaattaacttcaccagaaaagtcattct 79  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  22963465 aatgattggtcataggattaactttaccagaaaagtcattct 22963424  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 22998012 - 22998053
Alignment:
Q  38 aatgattggtcatagaattaacttcaccagaaaagtcattct 79  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  22998012 aatgattggtcataggattaactttaccagaaaagtcattct 22998053  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 17642640 - 17642687
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    |||||| ||||||||||||||| | |||||| |||||||||||||||||    
T  17642640 taaaatcaaaattcgctatatttt-tagggacgaaaaacttatttaacc 17642687  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 35652128 - 35652175
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    ||||||||||||| | |||||| |||||||| |||||||||||||||||    
T  35652128 taaaattaaaatttgatatatt-tatagggatgaaaaacttatttaacc 35652175  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 35665374 - 35665327
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    |||||| ||||||||||||||| |||| ||| |||||||||||||||||    
T  35665374 taaaatcaaaattcgctatatt-tataaggacgaaaaacttatttaacc 35665327  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 23757617 - 23757665
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    |||||| ||||||| ||||||| |||||||| |||||||||||||||||    
T  23757617 taaaatcaaaattcactatattttatagggacgaaaaacttatttaacc 23757665  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 22210250 - 22210322
Alignment:
Q  74 cattctattttatttttgaaatattaaaattaaaattcgctatattatatagggaagaaaaacttatttaacct 147  Q
    ||||||||||||||| | ||  | |||||| |||||||| |||||| |||| ||| ||||||||||||||||||    
T  22210250 cattctattttatttgttaaggaataaaatcaaaattcgttatatt-tataaggatgaaaaacttatttaacct 22210322  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 2145996 - 2145921
Alignment:
Q  74 cattctattttatttttgaaatattaaaattaaaattcgctatattatatagggaagaaaaacttatttaacctatt 150  Q
    ||||| |||| |||||| ||  |||||||| ||||||||||||||| ||||  || |||||||||||||||||||||    
T  2145996 cattcaatttaattttttaaggattaaaataaaaattcgctatatt-tataaagacgaaaaacttatttaacctatt 2145921  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 3953793 - 3953755
Alignment:
Q  41 gattggtcatagaattaacttcaccagaaaagtcattct 79  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  3953793 gattagtcataggattaacttcaccagaaaagtcattct 3953755  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 25245058 - 25245011
Alignment:
Q  99 aaaattaaaattcgctatattatatagggaagaaaaacttatttaacct 147  Q
    ||||| |||||||||||| || |||||||| ||||||||||||||||||    
T  25245058 aaaatcaaaattcgctatttt-tatagggatgaaaaacttatttaacct 25245011  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 30219067 - 30219114
Alignment:
Q  98 taaaattaaaattcgctatattatatagggaagaaaaacttatttaacc 146  Q
    |||||| ||||||||||||||| |||| ||| |||||||||||||||||    
T  30219067 taaaatcaaaattcgctatatt-tataaggacgaaaaacttatttaacc 30219114  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 19631818 - 19631773
Alignment:
Q  30 aaatgttcaatgattggtcatagaattaacttcaccagaaaagtcattct 79  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||    
T  19631818 aaatgttcaatgattggtcat----ttaacttcaccagaaaagtcattct 19631773  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 34491484 - 34491525
Alignment:
Q  30 aaatgttcaatgattggtcatagaattaacttcaccagaaaa 71  Q
    ||||||| |||||||| ||||||||||||||||| |||||||    
T  34491484 aaatgtttaatgattgatcatagaattaacttcatcagaaaa 34491525  T

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