View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_53 (Length: 253)

Name: NF17596_low_53
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_53
NF17596_low_53
[»] chr5 (16 HSPs)
chr5 (82-253)||(9872224-9872395)
chr5 (83-253)||(9877340-9877510)
chr5 (83-253)||(39904078-39904248)
chr5 (83-253)||(39909191-39909361)
chr5 (82-253)||(13556104-13556275)
chr5 (183-253)||(2023245-2023315)
chr5 (119-210)||(4555870-4555962)
chr5 (125-176)||(2024354-2024405)
chr5 (83-134)||(4555967-4556018)
chr5 (88-163)||(24091794-24091869)
chr5 (83-128)||(2024422-2024467)
chr5 (83-139)||(43540564-43540620)
chr5 (184-253)||(2023186-2023255)
chr5 (83-140)||(35368623-35368680)
chr5 (184-249)||(35368744-35368809)
chr5 (184-253)||(43379616-43379685)
[»] chr2 (12 HSPs)
chr2 (82-253)||(14917182-14917353)
chr2 (83-253)||(45120620-45120790)
chr2 (83-253)||(17720327-17720497)
chr2 (81-238)||(39178847-39179004)
chr2 (83-249)||(30283251-30283417)
chr2 (83-218)||(17720000-17720135)
chr2 (83-137)||(42780542-42780596)
chr2 (83-249)||(716550-716715)
chr2 (184-249)||(20892252-20892317)
chr2 (184-249)||(42780410-42780475)
chr2 (125-168)||(20892160-20892203)
chr2 (121-165)||(42780494-42780538)
[»] chr8 (13 HSPs)
chr8 (83-253)||(14318416-14318586)
chr8 (83-253)||(26986790-26986960)
chr8 (83-253)||(34108464-34108634)
chr8 (82-253)||(18493977-18494148)
chr8 (82-253)||(26981675-26981846)
chr8 (83-253)||(14314712-14314882)
chr8 (125-231)||(10340760-10340867)
chr8 (83-253)||(43956651-43956821)
chr8 (184-253)||(10340869-10340938)
chr8 (83-128)||(10340698-10340743)
chr8 (186-249)||(18608554-18608617)
chr8 (86-128)||(18608435-18608477)
chr8 (83-139)||(1782181-1782237)
[»] chr7 (12 HSPs)
chr7 (83-253)||(12857022-12857192)
chr7 (83-253)||(26051254-26051424)
chr7 (83-253)||(26060613-26060783)
chr7 (83-253)||(26056367-26056537)
chr7 (83-253)||(26065726-26065896)
chr7 (83-253)||(12851909-12852079)
chr7 (121-253)||(14610562-14610694)
chr7 (83-137)||(4181276-4181330)
chr7 (83-139)||(2248853-2248909)
chr7 (83-131)||(35352121-35352169)
chr7 (83-139)||(37459703-37459759)
chr7 (184-249)||(35352222-35352287)
[»] chr6 (11 HSPs)
chr6 (83-253)||(21276006-21276176)
chr6 (83-160)||(20751881-20751957)
chr6 (84-168)||(11182989-11183073)
chr6 (83-139)||(21936408-21936464)
chr6 (85-139)||(12909621-12909675)
chr6 (85-139)||(12934728-12934782)
chr6 (83-168)||(21937943-21938028)
chr6 (197-249)||(21937803-21937855)
chr6 (184-249)||(20752040-20752105)
chr6 (184-249)||(24508762-24508827)
chr6 (202-246)||(21936606-21936650)
[»] chr4 (33 HSPs)
chr4 (83-253)||(35091148-35091318)
chr4 (83-253)||(35096261-35096431)
chr4 (81-253)||(32429032-32429205)
chr4 (83-249)||(3424114-3424280)
chr4 (134-249)||(18671126-18671242)
chr4 (125-249)||(18716776-18716901)
chr4 (130-249)||(3409396-3409516)
chr4 (125-249)||(18737449-18737574)
chr4 (17-83)||(39503242-39503308)
chr4 (83-160)||(34279254-34279331)
chr4 (184-253)||(3409510-3409579)
chr4 (83-140)||(22119073-22119130)
chr4 (92-249)||(54858987-54859144)
chr4 (197-249)||(25618163-25618215)
chr4 (83-139)||(47071758-47071814)
chr4 (184-253)||(32429195-32429264)
chr4 (184-249)||(47071628-47071693)
chr4 (83-139)||(14643526-14643582)
chr4 (82-119)||(3409328-3409365)
chr4 (184-253)||(25618209-25618278)
chr4 (83-139)||(30019638-30019692)
chr4 (83-141)||(25618050-25618108)
chr4 (184-246)||(34279356-34279418)
chr4 (184-249)||(18671067-18671132)
chr4 (184-249)||(18716717-18716782)
chr4 (184-249)||(18737390-18737455)
chr4 (184-249)||(30019750-30019815)
chr4 (83-139)||(34601825-34601881)
chr4 (83-165)||(34128122-34128205)
chr4 (87-125)||(18716920-18716958)
chr4 (87-125)||(18737596-18737634)
chr4 (125-165)||(14643588-14643628)
chr4 (125-165)||(30019698-30019738)
[»] chr3 (29 HSPs)
chr3 (83-253)||(4050041-4050211)
chr3 (83-253)||(4055175-4055345)
chr3 (83-253)||(5481289-5481459)
chr3 (83-253)||(10672739-10672909)
chr3 (83-253)||(10677852-10678022)
chr3 (83-253)||(6852753-6852923)
chr3 (83-253)||(6857856-6858026)
chr3 (83-253)||(10584659-10584829)
chr3 (83-253)||(31081308-31081478)
chr3 (83-253)||(1302045-1302215)
chr3 (83-253)||(8464983-8465153)
chr3 (87-253)||(10591100-10591266)
chr3 (83-253)||(33702400-33702570)
chr3 (83-253)||(8458545-8458715)
chr3 (82-253)||(31076200-31076373)
chr3 (83-253)||(5457817-5457982)
chr3 (83-246)||(49784785-49784949)
chr3 (85-210)||(20891424-20891550)
chr3 (83-180)||(269483-269580)
chr3 (83-139)||(29827829-29827885)
chr3 (83-209)||(3187246-3187373)
chr3 (83-134)||(18023914-18023965)
chr3 (183-253)||(49784719-49784789)
chr3 (184-253)||(29827636-29827705)
chr3 (85-137)||(18023324-18023376)
chr3 (130-176)||(18023982-18024028)
chr3 (220-249)||(20891373-20891402)
chr3 (184-249)||(29827699-29827764)
chr3 (209-253)||(18023466-18023510)
[»] chr1 (28 HSPs)
chr1 (83-253)||(28574530-28574700)
chr1 (83-253)||(28598542-28598712)
chr1 (83-253)||(3468301-3468471)
chr1 (83-242)||(43359045-43359205)
chr1 (83-249)||(16051422-16051588)
chr1 (111-249)||(3701293-3701432)
chr1 (119-244)||(3696167-3696293)
chr1 (184-253)||(43358976-43359045)
chr1 (121-209)||(17414361-17414450)
chr1 (84-139)||(17414304-17414359)
chr1 (199-249)||(10185926-10185976)
chr1 (85-139)||(13654676-13654730)
chr1 (85-139)||(35653036-35653090)
chr1 (94-139)||(10186056-10186101)
chr1 (83-139)||(1188333-1188389)
chr1 (87-139)||(10186307-10186359)
chr1 (186-249)||(21431585-21431648)
chr1 (83-137)||(3696111-3696165)
chr1 (183-249)||(19311050-19311116)
chr1 (89-139)||(19311180-19311230)
chr1 (184-249)||(10186483-10186548)
chr1 (197-249)||(10186437-10186489)
chr1 (83-140)||(21430777-21430833)
chr1 (83-136)||(35626539-35626591)
chr1 (197-249)||(21431537-21431589)
chr1 (96-139)||(1188178-1188221)
chr1 (184-249)||(1188048-1188113)
chr1 (125-165)||(19311134-19311174)
[»] scaffold0223 (1 HSPs)
scaffold0223 (83-253)||(1820-1990)
[»] scaffold0006 (1 HSPs)
scaffold0006 (85-139)||(144437-144491)
[»] scaffold0005 (2 HSPs)
scaffold0005 (83-139)||(173710-173766)
scaffold0005 (125-165)||(173664-173704)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 9872224 - 9872395
Alignment:
Q  82 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872224 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 9872323  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872324 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 9872395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 9877340 - 9877510
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9877340 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 9877439  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9877440 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 9877510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 39904248 - 39904078
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39904248 tgttggtgatttccaaaataattgaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 39904149  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  39904148 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaatagtgcttaatgaatcat 39904078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 39909361 - 39909191
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  39909361 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcgtgtaaaccattcatatacattggaacattattatttattatta 39909262  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39909261 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 39909191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 13556104 - 13556275
Alignment:
Q  82 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatta-- 179  Q
    ||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||| | ||||||||||||||||| |  ||    | ||      
T  13556104 ctgttggtgatttccaaaataatggaatcactttaaaaccaagagttgtaactcttcatgggaatctttcatatacattggaacct--ttggcaaatagg 13556201  T
Q  180 ttaataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |   ||||||||  |  ||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  13556202 tgcttaatgaacatttgcattgattcaagtgtatatgattataacctttggcaaaaaggtgcttaatgaatcat 13556275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 2023315 - 2023245
Alignment:
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  2023315 ataatgaaccatgacattgattcaagtgtgtatggttataacctttggcaaaagggtgcttaatgaatcat 2023245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 4555962 - 4555870
Alignment:
Q  119 atcaaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttattaataatgaaccatgacattgattcaagta 210  Q
    ||||||||||||| ||||||| || || ||||||||||||||| || ||||||||||| ||||  ||| |||||||| |||||||||||||||    
T  4555962 atcaaaagttatacctcttcacggaaatcattcatatacattgaaaaattattatttacttatagatagtgaaccataacattgattcaagta 4555870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 2024405 - 2024354
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaacattattattta 176  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2024405 agttgtaactcttcacgggaaccattcatatacattggaacattattattta 2024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 4556018 - 4555967
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataact 134  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  4556018 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaact 4555967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 24091794 - 24091869
Alignment:
Q  88 gtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattgga 163  Q
    ||||||||||||||||| |||||||||||||| ||| |||| |||||||| ||| ||| | |||||||||||||||    
T  24091794 gtgatttccaaaataatagaatcactttagaaccaagagttgtaactctttatgagaatctttcatatacattgga 24091869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 2024467 - 2024422
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagtt 128  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  2024467 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 2024422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 43540564 - 43540620
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||    
T  43540564 tgttggtgatttccaaaataattgaatcaatttagaaccaaaagttgtaactcttca 43540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 2023255 - 2023186
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||| ||| |||||||||||||| |||||| | |||||||||| |||| ||||| ||||||||||||    
T  2023255 taatgaatcataacattgattcaagtgtatatgatcataacctttgacaaatgggtgtttaatgaatcat 2023186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 35368623 - 35368680
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcat 140  Q
    ||||||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||||    
T  35368623 tgttggtaatttctaaaagaatggaatcactttagaatcaaaagttgtaacttttcat 35368680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 35368744 - 35368809
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||| |  |||||||| |||| |||||| |||||||||||| ||||  |||||||||||||    
T  35368744 taatgaaccttagcattgatttaagtgtatatgattataacctttgacaaagaggtgcttaatgaa 35368809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 43379685 - 43379616
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||| |  ||||||||||||| |||||| | |||| |||||| ||||| ||||||| ||||||||    
T  43379685 taatgaaccgtagcattgattcaagtgtatatgatcataaactttggtaaaagagtgcttagtgaatcat 43379616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 14917182 - 14917353
Alignment:
Q  82 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14917182 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 14917281  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14917282 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 14917353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 45120790 - 45120620
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45120790 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactcttcatgggaaccattcatatacattgaaacattattatttattatta 45120691  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45120690 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 45120620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 17720327 - 17720497
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17720327 tgttggtgatttccaaaataatagaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 17720426  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17720427 ataatgaaccatgacattgattgaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 17720497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 39179004 - 39178847
Alignment:
Q  81 actgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattat 180  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39179004 actgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattat 39178905  T
Q  181 taataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaaggg 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39178904 taataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaaggg 39178847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 30283251 - 30283417
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  30283251 tgttggtgatttccaaaataatggaatcattttagaaccaaaagttgtaactcttcatgggaaccattcatgtacattggaacattattatttattattg 30283350  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30283351 atactgaaccatgacattgattcaagtatatatggttataatctttggcaaaagggtgcttaatgaa 30283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 17720000 - 17720135
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17720000 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaactattcatatacattggaacattattatttattatta 17720099  T
Q  183 ataatgaaccatgacattgattcaagtatatatggt 218  Q
    ||||||||||||||||||||||||||||||||||||    
T  17720100 ataatgaaccatgacattgattcaagtatatatggt 17720135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 42780596 - 42780542
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 137  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  42780596 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttactctt 42780542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 716715 - 716550
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacatta--ttatttattat 180  Q
    ||||| ||||||  ||||||||||||||| |||||| | ||||||| |||||||| ||| ||| | ||||||||||||||||| |||  | | |   | |    
T  716715 tgttgatgatttttaaaataatggaatcattttagatt-aaaagttgtaactctttatgtgaatctttcatatacattggaaccttaggtaaataggtgt 716617  T
Q  181 taataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    |  |||| |||| |  ||||||||||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  716616 t--taataaacctttgcattgattcaagtgtatatgattataacctttggtaaaggggtgcttaatgaa 716550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 20892252 - 20892317
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| |||||||||||||| |||||| | ||||| |||| ||||| |||||||||||||    
T  20892252 taatgaaccataacattgattcaagtgtatatgatcataacatttgccaaaaaggtgcttaatgaa 20892317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 42780475 - 42780410
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||||||| ||  ||||||||||    
T  42780475 taatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggtggcttaatgaa 42780410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 20892160 - 20892203
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaacatt 168  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  20892160 agttgtaactcttcatgagaaccattcatatacattggaacatt 20892203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 42780538 - 42780494
Alignment:
Q  121 caaaagttataactcttcatgggaaccattcatatacattggaac 165  Q
    |||||||| |||||||||||| ||| | |||||||||||||||||    
T  42780538 caaaagttgtaactcttcatgagaatctttcatatacattggaac 42780494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 14318416 - 14318586
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14318416 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 14318515  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14318516 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 14318586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 26986790 - 26986960
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26986790 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26986889  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26986890 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 26986960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 34108634 - 34108464
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34108634 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 34108535  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34108534 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 34108464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 18493977 - 18494148
Alignment:
Q  82 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 181  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18493977 ctgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 18494076  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18494077 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 18494148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 26981675 - 26981846
Alignment:
Q  82 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatt 181  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26981675 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatt 26981774  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26981775 aataatgaaccatgacattgattcaagtatatacggttataacctttggcaaaagggtgcttaatgaatcat 26981846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 14314712 - 14314882
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  14314712 tgttggtgattttcaaaataatggaattactttagaaccaaaagttgtaactcttaatgggaaccattcgtatacattggaacattattatttattatta 14314811  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14314812 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 14314882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 10340760 - 10340867
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacattgattcaagtatatatggttataa 223  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| | |||||||||||    
T  10340760 agttgtaactcttcatggaaaccattcatatacattggaacattattatttattgatagataatgaaccatgacattgattcaagtgtgtatggttataa 10340859  T
Q  224 cctttggc 231  Q
    ||||||||    
T  10340860 cctttggc 10340867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 43956651 - 43956821
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaa-cattattatttattatt 181  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||| || | |||||||||||||||| | ||   |  ||   |     
T  43956651 tgttggtgatttttaaaataatggaatcactttagaatcaagagttgtaactcttcatggaaatctttcatatacattggaatctttggcaaata-ggtg 43956749  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
      ||||||||  | |||||||||||| | |||||| |||||||||||||||||| |||||||||||||||||    
T  43956750 cttaatgaacatttacattgattcaaatgtatatgattataacctttggcaaaaaggtgcttaatgaatcat 43956821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 10340869 - 10340938
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||| ||| |||||||||||||| |||||| | |||||||||| |||||||||||||||||||||||    
T  10340869 taatgaatcataacattgattcaagtgtatatgatcataacctttgacaaaagggtgcttaatgaatcat 10340938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 10340698 - 10340743
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagtt 128  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||    
T  10340698 tgttggtgatttcccaaataatggaatcactttagaaccaaaagtt 10340743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 18608554 - 18608617
Alignment:
Q  186 atgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    |||||||||  || |||||||||| |||||| | ||||||||||||||| ||||||||||||||    
T  18608554 atgaaccatagcagtgattcaagtgtatatgttcataacctttggcaaaggggtgcttaatgaa 18608617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 18608435 - 18608477
Alignment:
Q  86 tggtgatttccaaaataatggaatcactttagaatcaaaagtt 128  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  18608435 tggtgatttccaaaataatggaatcactttagaactaaaagtt 18608477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 1782237 - 1782181
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||| |||||| ||||||||||||| | |||||||  ||||||||||||||||||    
T  1782237 tgttggagatttctaaaataatggaattattttagaacaaaaagttataactcttca 1782181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 12857192 - 12857022
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12857192 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 12857093  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12857092 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 12857022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 26051424 - 26051254
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26051424 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26051325  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26051324 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 26051254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 26060783 - 26060613
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26060783 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 26060684  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26060683 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 26060613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 26056537 - 26056367
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26056537 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattg 26056438  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26056437 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 26056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 26065896 - 26065726
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26065896 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattg 26065797  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26065796 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 26065726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 12852079 - 12851909
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  12852079 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattgttacattattatttattatta 12851980  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12851979 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 12851909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 14610694 - 14610562
Alignment:
Q  121 caaaagttataactcttcatgggaaccattcatatacattggaacattattatttattattaataatgaaccatgacattgattcaagtatatatggtta 220  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610694 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattaataatgaaccatgacattgattcaagtatatatggtta 14610595  T
Q  221 taacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||    
T  14610594 taacctttggcaaaagggtgcttaatgaatcat 14610562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 4181276 - 4181330
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 137  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  4181276 tgttggtgatttccaaaataatggaatcactttaaaatcaaaagttgcaactctt 4181330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 2248853 - 2248909
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||  ||||||||||    
T  2248853 tgttggtgatttctaaaataatggaatcactttagaaccaaaagtagtaactcttca 2248909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 35352121 - 35352169
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttata 131  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  35352121 tgttggtgatttccgaaataatgaaattactttagaatcaaaagttata 35352169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 37459703 - 37459759
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||| |||||||  |||||||||||||||||||| ||||||||||| ||||||||||    
T  37459703 tgttagtgatttttaaaataatggaatcactttaaaatcaaaagttttaactcttca 37459759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 35352222 - 35352287
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||| ||| |||||||||||||| |||||  | ||||||||||  ||| ||||||||||||||    
T  35352222 taatgaatcataacattgattcaagtgtatataatcataacctttgataaatgggtgcttaatgaa 35352287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 21276176 - 21276006
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21276176 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 21276077  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21276076 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 21276006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 20751881 - 20751957
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacatt 160  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||| ||||||||||||    
T  20751881 tgttggtgatttccaaaataatggattcactttag-atcaaaagttgtaactcttcatgagaacctttcatatacatt 20751957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 11182989 - 11183073
Alignment:
Q  84 gttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacatt 168  Q
    |||||| ||||| ||||||||||||||| ||||||| |||| ||| ||||||||||||| || | ||||||||||||||||||||    
T  11182989 gttggtcatttctaaaataatggaatcaatttagaaccaaatgttgtaactcttcatggaaatctttcatatacattggaacatt 11183073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 21936408 - 21936464
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  21936408 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 21936464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 12909675 - 12909621
Alignment:
Q  85 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  12909675 ttggtgatttctaaaataatggaatcactttagaaccaaaagttgtaactcttca 12909621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 12934782 - 12934728
Alignment:
Q  85 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  12934782 ttggtgatttccaaaataatggaatcactctagaaccaaaagttgtaactcttca 12934728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 21938028 - 21937943
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacatt 168  Q
    ||||||||||||||||||||||||||||| ||||||| || ||  | ||||||||||||  ||   ||| ||||||||||||||||    
T  21938028 tgttggtgatttccaaaataatggaatcattttagaaccataatatgtaactcttcatgaaaatatttcgtatacattggaacatt 21937943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 21937855 - 21937803
Alignment:
Q  197 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||||| |||||| | ||||||||||||||||||||| ||||||||    
T  21937855 cattgattcaagtgtatatgatcataacctttggcaaaagggtgtttaatgaa 21937803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 20752040 - 20752105
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||| |  ||||||||||||| |||||||  |||||||||| ||||| |||||||||||||    
T  20752040 taatgaaccttagcattgattcaagtgtatatggccataacctttgacaaaatggtgcttaatgaa 20752105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 24508762 - 24508827
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||| |  |||| |||||||| |||| | | ||||||||||||||||||||||||||||||    
T  24508762 taatgaaccttagcattaattcaagtgtataagatcataacctttggcaaaagggtgcttaatgaa 24508827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 21936606 - 21936650
Alignment:
Q  202 attcaagtatatatggttataacctttggcaaaagggtgcttaat 246  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||    
T  21936606 attcaagtgtatatgatcataacctttggcaaaaaggtgcttaat 21936650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 35091318 - 35091148
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091318 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 35091219  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091218 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 35091148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 35096431 - 35096261
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096431 tgttggtgatttccaaaataatggaatcactttagaacaaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 35096332  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096331 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 35096261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 32429032 - 32429205
Alignment:
Q  81 actgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-a 179  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| || |||||||||||||||||||||||||||||||| |    
T  32429032 actgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatggaaatcattcatatacattggaacattattatttattga 32429131  T
Q  180 ttaataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |  |||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  32429132 tagataatgaaccatgacaatgattcaagtgtatatggttataacatttggcaaaagggtgcttaatgaatcat 32429205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 3424114 - 3424280
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||  ||    
T  3424114 tgtttgtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaaccat-catatacattggaacattattatttattgata 3424212  T
Q  183 -ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
     ||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  3424213 gataatgaaccatgacattgattcaaatgtgtatggttataacctttggcaaaagggtgcttaatgaa 3424280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 18671242 - 18671126
Alignment:
Q  134 tcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacattgattcaagtatatatggttataacctttggca 232  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  18671242 tcttcatgggaaccattcatatacattggtacattattatttattgataaataatgaaccatgacattgatttaagtgtatatggttataacctttggca 18671143  T
Q  233 aaagggtgcttaatgaa 249  Q
    ||| |||||||||||||    
T  18671142 aaatggtgcttaatgaa 18671126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 18716901 - 18716776
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccatgacattgattcaagtatatatggttataa 223  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |  || ||||||||||||||||||||||||||| |||||||||||||    
T  18716901 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataa 18716802  T
Q  224 cctttggcaaaagggtgcttaatgaa 249  Q
    |||||||| |||  ||||||||||||    
T  18716801 cctttggccaaatagtgcttaatgaa 18716776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 3409396 - 3409516
Alignment:
Q  130 taactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccatgacattgattcaagtatatatggttataaccttt 228  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| | | ||| ||||||||||||    
T  3409396 taactcttcatgagaaccattcatatacattggaacattattatttattgatagataatgaaccatgacattgattcaaatgtgtatagttataaccttt 3409495  T
Q  229 ggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| |||||||||    
T  3409496 ggcaaaagggtacttaatgaa 3409516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 18737574 - 18737449
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccatgacattgattcaagtatatatggttataa 223  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |  || ||||||||||||||||||||||||||| ||||| |||||||    
T  18737574 agttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaaccatgacattgattcaagtgtatattgttataa 18737475  T
Q  224 cctttggcaaaagggtgcttaatgaa 249  Q
    |||||||| |||  ||||||||||||    
T  18737474 cctttggctaaattgtgcttaatgaa 18737449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 39503308 - 39503242
Alignment:
Q  17 agatcttattcctatcactcattcactcctttttattctactaaatttctacaatagagtttggact 83  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  39503308 agatcttattcctatcactcattcactcctttttcttctactaaatttctacaatagggtttggact 39503242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 34279254 - 34279331
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacatt 160  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||  || |||||||||||| ||||||||||||||    
T  34279254 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtttcaattcttcatgggaatcattcatatacatt 34279331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 3409510 - 3409579
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||||||| ||||||||||||||||||    
T  3409510 taatgaaccataacattgattcaagtgtatatgatcataacctttggcaaaggggtgcttaatgaatcat 3409579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 22119130 - 22119073
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcat 140  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  22119130 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtaactcttcat 22119073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 54858987 - 54859144
Alignment:
Q  92 tttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattattaataatgaac 191  Q
    ||||||||||||| ||||||||||| || ||||| || ||||||||||| |||| ||||||||||||||||||| ||       |   |   |||||||     
T  54858987 tttccaaaataatagaatcactttacaaccaaaaattgtaactcttcattggaatcattcatatacattggaacctttggcaaaagggtgcttaatgaaa 54859086  T
Q  192 catgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||| |||||||||||||| |||||| | ||||||||||||||| || |||||||||||    
T  54859087 cataacattgattcaagtgtatatgatcataacctttggcaaatggatgcttaatgaa 54859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 25618163 - 25618215
Alignment:
Q  197 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  25618163 cattgattcaagtgtatatggttataacatttggcaaaagggtgcttaatgaa 25618215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 47071814 - 47071758
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  47071814 tgttggtgatttccaaaataatggaatcactttacaaccaaaagttgtaactcttca 47071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 32429195 - 32429264
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||| ||| |||||||||||||| |||||| | |||||||||| |||| ||||||||||||||||||    
T  32429195 taatgaatcataacattgattcaagtgtatatgatcataacctttgacaaaggggtgcttaatgaatcat 32429264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 47071693 - 47071628
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||||||| || |||||||||||    
T  47071693 taatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggatgcttaatgaa 47071628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 14643526 - 14643582
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||    
T  14643526 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 14643582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 3409328 - 3409365
Alignment:
Q  82 ctgttggtgatttccaaaataatggaatcactttagaa 119  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3409328 ctgttggtgatttccaaaataatggaatcactttagaa 3409365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 25618209 - 25618278
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||| ||||  || |||||||||||||||    
T  25618209 taatgaaccataacattgattcaagtgtatatgatcataacctttcgcaactggatgcttaatgaatcat 25618278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 30019638 - 30019692
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||    
T  30019638 tgttggtgatttctaaaataatggaatcactttagaatc--aagttgtaactcttca 30019692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 25618050 - 25618108
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatg 141  Q
    |||||||||||||||||||| ||||||||||||||||  || |||| ||||| ||||||    
T  25618050 tgttggtgatttccaaaatattggaatcactttagaactaagagttgtaactgttcatg 25618108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 34279356 - 34279418
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaat 246  Q
    ||||||||| |  ||||||||||||| |||||| ||||||||||||||||| | |||||||||    
T  34279356 taatgaaccttagcattgattcaagtgtatatgattataacctttggcaaatgagtgcttaat 34279418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 18671132 - 18671067
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| |||||||||||||| ||||||   ||||||||||| ||||| | ||||||||||    
T  18671132 taatgaaccataacattgattcaagtgtatatgaagataacctttggtaaaagagggcttaatgaa 18671067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 18716782 - 18716717
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| |||||||||||||| |||||| | ||||| ||||| ||||| | ||||||||||    
T  18716782 taatgaaccataacattgattcaagtgtatatgatcataacttttggtaaaagagagcttaatgaa 18716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 18737455 - 18737390
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| |||||||||||||| |||||| | ||||| ||||| ||||| | ||||||||||    
T  18737455 taatgaaccataacattgattcaagtgtatatgatcataacttttggtaaaagagagcttaatgaa 18737390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 30019750 - 30019815
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||| |  ||||||||||||| | |||| | |||||||||||||||| |||||||||||||    
T  30019750 taatgaacctttgcattgattcaagtgtgtatgatcataacctttggcaaaaaggtgcttaatgaa 30019815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 34601825 - 34601881
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||| ||||||||||||||| |||||||  ||||||| ||||| ||||    
T  34601825 tgttggtgatttctaaaataatggaatcattttagaactaaaagttgtaacttttca 34601881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 34128122 - 34128205
Alignment:
Q  83 tgttggtgatttcc-aaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaac 165  Q
    |||||||||||||| ||||| ||||||||| ||||||| |||||||| |||||||   || ||| | |||||||| ||||||||    
T  34128122 tgttggtgatttccaaaaattatggaatcattttagaaccaaaagttgtaactctctgtgagaatctttcatatatattggaac 34128205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 18716958 - 18716920
Alignment:
Q  87 ggtgatttccaaaataatggaatcactttagaatcaaaa 125  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  18716958 ggtgatttccaaaataatggaatcagtttagaaccaaaa 18716920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 18737634 - 18737596
Alignment:
Q  87 ggtgatttccaaaataatggaatcactttagaatcaaaa 125  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  18737634 ggtgatttccaaaataatggaatcagtttagaaccaaaa 18737596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 14643588 - 14643628
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaac 165  Q
    |||| ||||| |||||||||| |||||||||||||||||||    
T  14643588 agttgtaactattcatgggaatcattcatatacattggaac 14643628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 30019698 - 30019738
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaac 165  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  30019698 agttgtaactcttcatgggaatctttcatatacattggaac 30019738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 4050211 - 4050041
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050211 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 4050112  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050111 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 4050041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 4055345 - 4055175
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4055345 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 4055246  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4055245 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 4055175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 5481289 - 5481459
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5481289 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 5481388  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5481389 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 5481459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 10672739 - 10672909
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10672739 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 10672838  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10672839 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 10672909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 10677852 - 10678022
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10677852 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 10677951  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10677952 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 10678022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 6852753 - 6852923
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852753 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 6852852  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6852853 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttgatgaatcat 6852923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 6857856 - 6858026
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857856 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 6857955  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6857956 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttgatgaatcat 6858026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 10584659 - 10584829
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584659 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 10584758  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10584759 ataatgaaccatgacattgattcaaatatatatggttataacctttggcaaaagggtgcttaatgaatcat 10584829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 31081308 - 31081478
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081308 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatgggaaccattcatatacattggaacattattatttattatta 31081407  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081408 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 31081478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 1302045 - 1302215
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1302045 tgttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatatattggaacattattatttattatta 1302144  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1302145 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 1302215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 8465153 - 8464983
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8465153 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 8465054  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8465053 ataatgaaccatgacattgactcaagtatatatggttataacctttggcaaaatggtgcttaatgaatcat 8464983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 10591100 - 10591266
Alignment:
Q  87 ggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattattaataa 186  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591100 ggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattattaataa 10591199  T
Q  187 tgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10591200 tgaaccatgacattgattcaagtatatatggttataacctttggtaaaagggtgcttaatgaatcat 10591266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 33702400 - 33702570
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33702400 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacataggaacattattatttattatta 33702499  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33702500 ataatgaaccatgacattgattcaagtatataaggttataacctttggcaaaagggtgcttaatgaatcat 33702570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 8458715 - 8458545
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8458715 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 8458616  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8458615 ataatgaaccataacattgattcaagtatatatggttataacctttggcaaaagggtggttaatgaatcat 8458545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 31076200 - 31076373
Alignment:
Q  82 ctgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttat--ta 179  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||  ||    
T  31076200 ctgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttcatggaaaccattcatatacattggaacattattatttattgta 31076299  T
Q  180 ttaataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31076300 ttaataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 31076373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 5457817 - 5457982
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||||||||||||||||||     |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5457817 tgttggtgatttccaaaataatggaat-----tagaatcaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 5457911  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5457912 ataatgaaccatgacattgattcaagtatatatggttataacccttggcaaaagggtgcttaatgaatcat 5457982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 83 - 246
Target Start/End: Complemental strand, 49784949 - 49784785
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-att 181  Q
    |||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||     
T  49784949 tgttggtgatttccaaaataatagaatcactttaaaaccaaaagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgata 49784850  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaat 246  Q
     ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  49784849 gataatgaaccatgacattgattcaagtgtatatggttataacatttggcaaaagggtgcataat 49784785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 20891550 - 20891424
Alignment:
Q  85 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttattaa 183  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||| || ||||||||||| | ||  |    
T  20891550 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgagaatcattcatatacattgaaaaattattatttactgataga 20891451  T
Q  184 taatgaaccatgacattgattcaagta 210  Q
    ||||||||||| |||||||||||||||    
T  20891450 taatgaaccataacattgattcaagta 20891424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 269580 - 269483
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattat 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||||||||||| |||||||||||||||||||||||    
T  269580 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttgtagctctttatggaaaccattcatatatattggaacattattatttattat 269483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 29827885 - 29827829
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  29827885 tgttggtgatttccaaaagaatggaatcactttagaatcaaaagttgtaactcttca 29827829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 209
Target Start/End: Original strand, 3187246 - 3187373
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattattta-ttatt 181  Q
    |||| |||||||  |||| ||| ||||||||||| ||||||||||| ||| | || ||| ||| ||||||||| |||||||||| ||||||||| | ||     
T  3187246 tgtttgtgatttttaaaacaattgaatcactttaaaatcaaaagttgtaattttttatgagaatcattcatatgcattggaacaatattatttactgata 3187345  T
Q  182 aataatgaaccatgacattgattcaagt 209  Q
     ||||||||| || ||||||||||||||    
T  3187346 gataatgaactataacattgattcaagt 3187373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 18023914 - 18023965
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataact 134  Q
    |||||||||||||||||||||||||||||||||| || |||||||| |||||    
T  18023914 tgttggtgatttccaaaataatggaatcactttataaccaaaagttgtaact 18023965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 49784789 - 49784719
Alignment:
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||| ||||||  ||||||||||||| |||||| | |||| |||||||||| ||||||||||||||||||    
T  49784789 ataataaaccatatcattgattcaagtgtatatgatcataagctttggcaaatgggtgcttaatgaatcat 49784719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 29827705 - 29827636
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||| |  ||||||||||||| | |||||| |||| ||||||||||| |||||||||||||||||    
T  29827705 taatgaaccttagcattgattcaagtgtgtatggtcataatctttggcaaaatggtgcttaatgaatcat 29827636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 18023324 - 18023376
Alignment:
Q  85 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 137  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||| ||||    
T  18023324 ttggtgatttccaaaataatggaatcactttagaattgaaagttgtaagtctt 18023376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 18023982 - 18024028
Alignment:
Q  130 taactcttcatgggaaccattcatatacattggaacattattattta 176  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||    
T  18023982 taactcttcataggaatcaatcatatacattggaacattattattta 18024028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 20891402 - 20891373
Alignment:
Q  220 ataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||||||||||||||||||||||    
T  20891402 ataacctttggcaaaagggtgcttaatgaa 20891373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 29827764 - 29827699
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||| |  ||||||||||||| |||||| ||||||| |||| ||||  |||||||||||||    
T  29827764 taatgaacctttgcattgattcaagtgtatatgattataacatttgacaaattggtgcttaatgaa 29827699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 18023466 - 18023510
Alignment:
Q  209 tatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||| |||||| |||| ||| ||||||||||||||||||    
T  18023466 tatatatggtcataaccgttggtaaaggggtgcttaatgaatcat 18023510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 28574700 - 28574530
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574700 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 28574601  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574600 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 28574530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 28598712 - 28598542
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598712 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttcatgggaaccattcatatacattggaacattattatttattatta 28598613  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598612 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 28598542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 253
Target Start/End: Complemental strand, 3468471 - 3468301
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3468471 tgttggtgatttccaaaataatggaatcattttagaatcaaaagttgtaattcttcataggaaccattcatatacattggaacattattatttattatta 3468372  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3468371 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 3468301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 43359205 - 43359045
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-att 181  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||    
T  43359205 tgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttcatgagaatcattcatatacattggaacattattatttattgatt 43359106  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgct 242  Q
     |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  43359105 gataatgaaccatgatattgattcaagtgtatatggttataacatttggcaaaagggtgct 43359045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 16051588 - 16051422
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttat-tatt 181  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||  |||||| |  |  ||  ||     
T  16051588 tgttggtgatttctaaaataatggaatcactttagaaccaaaagttataactctttatgggaatcattcatatacattataacatt-tggtaaatggata 16051490  T
Q  182 aataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
      |||||||||||  ||||||||||||| |||||| | ||||| ||||||||| | ||||||||||||    
T  16051489 cttaatgaaccatagcattgattcaagtgtatatgatcataacatttggcaaatgagtgcttaatgaa 16051422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 3701293 - 3701432
Alignment:
Q  111 actttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccatgacattgattcaagt 209  Q
    ||||||||| |||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| || || ||||||||||||  |||||||||||||    
T  3701293 actttagaaccaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataatgaaccatagcattgattcaagt 3701392  T
Q  210 atatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
     ||| || | | ||||||||| |||  | |||||||||||    
T  3701393 gtatctgatcacaacctttggtaaattgatgcttaatgaa 3701432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 3696167 - 3696293
Alignment:
Q  119 atcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttatt-attaataatgaaccatgacattgattcaagtatatatgg 217  Q
    ||||||||||  |||| |||||||||| ||||||||||||||  ||||||||||||||   || ||||||||||||| | |||||||||||| ||||| |    
T  3696167 atcaaaagttgcaacttttcatgggaatcattcatatacattaaaacattattatttaccgataaataatgaaccataatattgattcaagtttatatag 3696266  T
Q  218 ttataacctttggcaaaagggtgctta 244  Q
    | |||||||||||||||  ||||||||    
T  3696267 tcataacctttggcaaataggtgctta 3696293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 43359045 - 43358976
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||||||| ||||||||||||||||||    
T  43359045 taatgaaccataacattgattcaagtgtatatgatcataacctttggcaaaggggtgcttaatgaatcat 43358976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 17414361 - 17414450
Alignment:
Q  121 caaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta-ataatgaaccatgacattgattcaagt 209  Q
    |||||||| |||||||||||  ||| |||||||||||||| ||||||||||||||| || || ||||||||||||  |||||||||||||    
T  17414361 caaaagttgtaactcttcattagaatcattcatatacattagaacattattatttactaatagataatgaaccatagcattgattcaagt 17414450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 17414304 - 17414359
Alignment:
Q  84 gttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||    
T  17414304 gttggtgatttccaaaataatggaatcactttagaaccaaaacttgtaactcttca 17414359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 10185976 - 10185926
Alignment:
Q  199 ttgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10185976 ttgattcaagtgtatatggttataacctttggcaaaaaggtgcttaatgaa 10185926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 13654730 - 13654676
Alignment:
Q  85 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  13654730 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 13654676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 35653036 - 35653090
Alignment:
Q  85 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  35653036 ttggtgatttccaaaataatggaatcactttggaaccaaaagttgtaactcttca 35653090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 10186101 - 10186056
Alignment:
Q  94 tccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  10186101 tccaaaataatggaatcactttagaatcaaaagttgtaactcttca 10186056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 1188389 - 1188333
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||    
T  1188389 tgttggtgatttccaaaataatggaatcactttagaaccaaaaattgtaacttttca 1188333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 10186307 - 10186359
Alignment:
Q  87 ggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10186307 ggtgctttccaaaataatggaatcactttagactcaaaagttttaactcttca 10186359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 21431585 - 21431648
Alignment:
Q  186 atgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||| | |||||||||||||| | |||| | ||||||||||||||||||||||||||||||    
T  21431585 atgaaccttaacattgattcaagtgtgtatgatcataacctttggcaaaagggtgcttaatgaa 21431648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 3696111 - 3696165
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactctt 137  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  3696111 tgttggtaatttctaaaataatggaatcactttggaatcaaaagttgtaactctt 3696165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 19311116 - 19311050
Alignment:
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    |||||||||| |  ||||||||||||| |||||| | ||||||||||| ||||||||||||||||||    
T  19311116 ataatgaaccttagcattgattcaagtgtatatgatcataacctttggtaaaagggtgcttaatgaa 19311050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 19311230 - 19311180
Alignment:
Q  89 tgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  19311230 tgatttccaaaataatggaatcactttataaccaaaagttgtaactcttca 19311180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 10186483 - 10186548
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    |||||||||||  ||||||||||||| |||||| | |||||||||| |||| ||||||||||||||    
T  10186483 taatgaaccatagcattgattcaagtgtatatgatcataacctttgacaaaggggtgcttaatgaa 10186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 10186437 - 10186489
Alignment:
Q  197 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||    
T  10186437 cattgattgaagtttatatggttgtaacttttggcaaaagggtgcttaatgaa 10186489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 21430777 - 21430833
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcat 140  Q
    |||||||||||| ||||||||| |||||| ||||| |||||||||| |||||||||||    
T  21430777 tgttggtgattttcaaaataatagaatcattttag-atcaaaagttgtaactcttcat 21430833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 35626591 - 35626539
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactct 136  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| || |||||||    
T  35626591 tgttggtgatttctaaaataatggaatcactttag-atcaaaaattgtaactct 35626539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 21431537 - 21431589
Alignment:
Q  197 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||||||| |||||  ||||||||||||||||| |||||||| |||||    
T  21431537 cattgattcaagtgtatataattataacctttggcaaatgggtgcttgatgaa 21431589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 1188221 - 1188178
Alignment:
Q  96 caaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  1188221 caaaataatggaatcactttagaaccaaaagttgtaacttttca 1188178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 1188113 - 1188048
Alignment:
Q  184 taatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaa 249  Q
    ||||||||| |  ||||||| ||||| |||||| | ||||||||||||||| ||||| ||||||||    
T  1188113 taatgaaccttagcattgatacaagtgtatatgatcataacctttggcaaatgggtgtttaatgaa 1188048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 19311174 - 19311134
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaac 165  Q
    |||| |||||||||||||||| | |||||||||||||||||    
T  19311174 agttgtaactcttcatgggaatctttcatatacattggaac 19311134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 83 - 253
Target Start/End: Original strand, 1820 - 1990
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttcatgggaaccattcatatacattggaacattattatttattatta 182  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1820 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtatctcttcatgggaaccattcatatacattggaacattactatttattatta 1919  T
Q  183 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1920 ataatgaaccatgacattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcat 1990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 144491 - 144437
Alignment:
Q  85 ttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  144491 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 144437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 173766 - 173710
Alignment:
Q  83 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttataactcttca 139  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||    
T  173766 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttca 173710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 173704 - 173664
Alignment:
Q  125 agttataactcttcatgggaaccattcatatacattggaac 165  Q
    |||| ||||| |||||||||| |||||||||||||||||||    
T  173704 agttgtaactattcatgggaatcattcatatacattggaac 173664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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