View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_61 (Length: 237)
Name: NF17596_low_61
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44730090 - 44730310
Alignment:
| Q |
1 |
gttcatttctaggttcttgtcagctggtaaaggtgttggttttttctggttcattgctgaatgaaactcaacaacaacatgttttgggtgatctaacata |
100 |
Q |
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| T |
44730090 |
gttcatttctaggttcttgtcagctggtaaaggtgttggttttttctggttcattgctgaatgaaactcaacaacaacatgttttgggtgatctaacata |
44730189 |
T |
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| Q |
101 |
agctctgctactgttattggttgatcaaattcttgaactgaaccatcatagtaaatgattttggttgtggcatgaaatgagatatggtttcccataagag |
200 |
Q |
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| T |
44730190 |
agctctgctactgttattggttgatcaaattcttgaactgaaccatcatagtaaatgattttggttgtggcatgaaatgagatatggtttcccataagag |
44730289 |
T |
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| Q |
201 |
gatattgttatgagtcaatac |
221 |
Q |
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|||||||||||||| |||||| |
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| T |
44730290 |
gatattgttatgagccaatac |
44730310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 39083985 - 39083839
Alignment:
| Q |
1 |
gttcatttctaggttcttgtcagctggtaaaggtgttggttttttctggttcattgctgaatgaaactcaacaacaacatgttttgggtgatctaacata |
100 |
Q |
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|||||| ||||| ||||||||||| ||||| ||||||||| |||| ||||||| ||||||||||||||||| || || | || ||| ||||| | ||| |
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| T |
39083985 |
gttcatatctagcttcttgtcagcaggtaatggtgttggtcttttttggttcacagctgaatgaaactcaactactactttttgtggatgatccatcatt |
39083886 |
T |
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| Q |
101 |
agctctgctactgttattggttgatcaaattcttgaactgaaccatc |
147 |
Q |
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| T |
39083885 |
aactctgccactgttattgcttcatcaaattcatgaactgaaccatc |
39083839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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