View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_62 (Length: 237)
Name: NF17596_low_62
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5764085 - 5764314
Alignment:
| Q |
1 |
atattaataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaa |
100 |
Q |
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| T |
5764085 |
atattaataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaa |
5764184 |
T |
|
| Q |
101 |
ccatattaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccat |
200 |
Q |
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| T |
5764185 |
ccatattaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccat |
5764284 |
T |
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| Q |
201 |
gggagaaaaggtatatatattcctatgtta |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5764285 |
gggagaaaaggtatatatattcctatgtta |
5764314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 5833739 - 5833520
Alignment:
| Q |
5 |
taataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccat |
104 |
Q |
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| T |
5833739 |
taatgagggtgactttgttgcatgctgcagaggtaacatgttggatggtaacaggagaaagacaagctgcaaggattcgtagcttgtacttgaaaaccat |
5833640 |
T |
|
| Q |
105 |
attaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatggga |
204 |
Q |
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| T |
5833639 |
attacaacaggatattgcattctttgatactgaaacaaacacaggagaggtaattggtagaatgtctggtgacacaattctcattcaagaggctatggga |
5833540 |
T |
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| Q |
205 |
gaaaaggtatatatattcct |
224 |
Q |
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| T |
5833539 |
gaaaaggtatttatgttcct |
5833520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 5821025 - 5821219
Alignment:
| Q |
17 |
ttttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcagga |
116 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||| ||||||| || |
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| T |
5821025 |
ttttgtttgatgctgcagaggtagcatgttggatggtgacaggagaaagacaagctgcaaggattcgtggcttgtacttgaaaactatactaaagcaaga |
5821124 |
T |
|
| Q |
117 |
tattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaagg |
211 |
Q |
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| T |
5821125 |
tatttcctactttgacactgaagcaaccagtggagaggttattggaagaatgtctggtgataccattctcattcaagatgccatgggagaaaagg |
5821219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 29331442 - 29331230
Alignment:
| Q |
5 |
taataagggtaattttgttccatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccat |
104 |
Q |
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|||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29331442 |
taatgagggtgactttgttgcatgctgcagaggtatcatgttggatggtgacaggagaaagacaatctgcgaggattcgtagtttgtacttgaaaaccat |
29331343 |
T |
|
| Q |
105 |
attaaagcaggatattgcattctttgacactgaaacaaacacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatggga |
204 |
Q |
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| T |
29331342 |
attaaagcaggatattgcattctttgacactgaaacaaacacaggagaggtaattagtagaatgtctggtgacacaattctcattcaagaagctatggga |
29331243 |
T |
|
| Q |
205 |
gaaaaggtatata |
217 |
Q |
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| T |
29331242 |
gaaaaggtatata |
29331230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 38527352 - 38527181
Alignment:
| Q |
43 |
tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
142 |
Q |
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||||||||||| ||||||||||||||| ||||||| || | | ||||| |||||||| ||||||| || ||| || | |||||||| | ||||||| |
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| T |
38527352 |
tgttggatggtaacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa |
38527253 |
T |
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| Q |
143 |
acacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
214 |
Q |
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| T |
38527252 |
acacaggagaagttgtaggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
38527181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 38568653 - 38568482
Alignment:
| Q |
43 |
tgttggatggtgacaggagaaagacaatctgcaaggattcgtagtttgtacttgaaaaccatattaaagcaggatattgcattctttgacactgaaacaa |
142 |
Q |
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||||||||||| ||||||||||||||| ||||||| || | | ||||| |||||||| ||||||| || ||| || | |||||||| | ||||||| |
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| T |
38568653 |
tgttggatggttacaggagaaagacaagctgcaagaataagaggattgtatttgaaaacaatattaagacaagatgttactttctttgataaagaaacaa |
38568554 |
T |
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| Q |
143 |
acacaggagaagtaattggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
214 |
Q |
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| T |
38568553 |
acacaggagaagttatagggagaatgtcaggtgatactgttcttattcaagatgccatgggtgagaaggtat |
38568482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 49738591 - 49738535
Alignment:
| Q |
158 |
ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
214 |
Q |
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|||| ||||| || ||||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
49738591 |
ttggaagaatatcaggtgacacagttcttattcaagatgccatgggagagaaggtat |
49738535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 51198057 - 51198113
Alignment:
| Q |
158 |
ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
214 |
Q |
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|||| |||||||||||||| || |||| ||||||||||||||||| || ||||||| |
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| T |
51198057 |
ttggaagaatgtctggtgatactgttcttattcaagatgccatgggtgagaaggtat |
51198113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 51211583 - 51211639
Alignment:
| Q |
158 |
ttggtagaatgtctggtgacacaattctcattcaagatgccatgggagaaaaggtat |
214 |
Q |
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|||| |||||||| ||||| ||| |||| |||||||| ||||||||||| ||||||| |
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| T |
51211583 |
ttggaagaatgtcaggtgatacagttcttattcaagaagccatgggagacaaggtat |
51211639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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