View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_65 (Length: 235)

Name: NF17596_low_65
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_65
NF17596_low_65
[»] chr5 (24 HSPs)
chr5 (103-196)||(5146675-5146768)
chr5 (103-221)||(26534645-26534763)
chr5 (101-197)||(8323879-8323975)
chr5 (104-197)||(791592-791685)
chr5 (104-221)||(130395-130512)
chr5 (104-196)||(33377820-33377912)
chr5 (123-197)||(42630878-42630952)
chr5 (103-195)||(8489122-8489214)
chr5 (104-196)||(13823320-13823412)
chr5 (104-195)||(6518203-6518294)
chr5 (104-195)||(19898927-19899018)
chr5 (104-179)||(26534506-26534581)
chr5 (103-179)||(130253-130329)
chr5 (104-196)||(228717-228809)
chr5 (104-179)||(8323707-8323782)
chr5 (104-179)||(42630711-42630786)
chr5 (104-173)||(35454451-35454519)
chr5 (122-195)||(40881992-40882065)
chr5 (107-179)||(35454639-35454710)
chr5 (104-195)||(40881792-40881881)
chr5 (107-173)||(19897228-19897293)
chr5 (103-172)||(14069860-14069928)
chr5 (104-173)||(14388515-14388583)
chr5 (104-172)||(5146504-5146571)
[»] chr2 (19 HSPs)
chr2 (104-197)||(16115046-16115139)
chr2 (104-221)||(42028578-42028695)
chr2 (103-197)||(13280006-13280100)
chr2 (102-197)||(2059655-2059750)
chr2 (103-197)||(31860256-31860350)
chr2 (103-177)||(36059278-36059352)
chr2 (103-197)||(7317806-7317900)
chr2 (103-179)||(7317634-7317710)
chr2 (103-179)||(15332851-15332927)
chr2 (104-196)||(31470587-31470678)
chr2 (104-195)||(38086140-38086231)
chr2 (104-179)||(42028767-42028842)
chr2 (104-179)||(16115233-16115308)
chr2 (104-165)||(13279840-13279901)
chr2 (104-173)||(31860079-31860148)
chr2 (104-176)||(38085967-38086038)
chr2 (105-170)||(3671822-3671886)
chr2 (122-195)||(3671996-3672069)
chr2 (104-156)||(31470790-31470841)
[»] chr6 (6 HSPs)
chr6 (105-197)||(33022339-33022431)
chr6 (102-179)||(33022162-33022239)
chr6 (104-196)||(21389021-21389113)
chr6 (105-196)||(7789842-7789933)
chr6 (105-194)||(28472535-28472624)
chr6 (107-173)||(21389217-21389282)
[»] chr4 (12 HSPs)
chr4 (104-221)||(40534110-40534227)
chr4 (104-221)||(3102687-3102804)
chr4 (101-195)||(18936850-18936944)
chr4 (101-173)||(11147011-11147083)
chr4 (123-221)||(9231727-9231825)
chr4 (103-179)||(3102539-3102615)
chr4 (103-195)||(37177799-37177891)
chr4 (103-179)||(40533962-40534038)
chr4 (105-179)||(13690216-13690290)
chr4 (103-170)||(5121005-5121072)
chr4 (104-179)||(9231580-9231655)
chr4 (103-189)||(18381488-18381574)
[»] chr3 (12 HSPs)
chr3 (102-197)||(33214441-33214536)
chr3 (111-197)||(36274126-36274212)
chr3 (104-197)||(27073079-27073172)
chr3 (104-196)||(36635410-36635502)
chr3 (1-60)||(21379652-21379711)
chr3 (103-195)||(19580483-19580575)
chr3 (103-179)||(33214628-33214704)
chr3 (106-179)||(10598810-10598883)
chr3 (102-165)||(27072911-27072974)
chr3 (104-166)||(10599000-10599062)
chr3 (103-179)||(36274314-36274390)
chr3 (104-167)||(33219072-33219135)
[»] chr8 (12 HSPs)
chr8 (104-221)||(37994855-37994972)
chr8 (103-196)||(397177-397270)
chr8 (102-195)||(41539768-41539861)
chr8 (104-196)||(2814416-2814508)
chr8 (123-179)||(44036833-44036889)
chr8 (122-197)||(25101748-25101823)
chr8 (103-176)||(41539963-41540035)
chr8 (103-195)||(14193323-14193414)
chr8 (104-179)||(37994708-37994783)
chr8 (158-197)||(44036985-44037024)
chr8 (103-176)||(2814242-2814314)
chr8 (104-173)||(14193520-14193588)
[»] chr1 (18 HSPs)
chr1 (104-197)||(10227712-10227805)
chr1 (104-221)||(26552139-26552256)
chr1 (104-196)||(50892963-50893055)
chr1 (101-195)||(23346416-23346510)
chr1 (103-195)||(28217692-28217784)
chr1 (104-196)||(41833874-41833966)
chr1 (105-173)||(50905107-50905175)
chr1 (105-196)||(39669230-39669321)
chr1 (104-195)||(48871410-48871501)
chr1 (108-179)||(19059378-19059449)
chr1 (134-195)||(7062037-7062098)
chr1 (112-197)||(19059549-19059634)
chr1 (103-170)||(10227910-10227977)
chr1 (103-173)||(28217529-28217598)
chr1 (104-173)||(48752589-48752657)
chr1 (105-191)||(50904992-50905080)
chr1 (121-196)||(42180744-42180818)
chr1 (103-173)||(7062192-7062261)
[»] chr7 (8 HSPs)
chr7 (104-196)||(7298635-7298727)
chr7 (104-196)||(40521188-40521280)
chr7 (103-197)||(19805585-19805679)
chr7 (104-173)||(28949001-28949069)
chr7 (104-179)||(19804797-19804872)
chr7 (103-173)||(40521015-40521084)
chr7 (134-196)||(46568130-46568192)
chr7 (103-172)||(7298833-7298901)
[»] scaffold0135 (2 HSPs)
scaffold0135 (123-221)||(37593-37691)
scaffold0135 (104-179)||(37446-37521)
[»] scaffold0214 (2 HSPs)
scaffold0214 (104-179)||(11816-11891)
scaffold0214 (108-197)||(11630-11719)
[»] scaffold0140 (1 HSPs)
scaffold0140 (101-172)||(15844-15915)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 5146768 - 5146675
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||| | ||||||||||||||    
T  5146768 agagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 5146675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 26534763 - 26534645
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnn 202  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||         
T  26534763 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaa 26534664  T
Q  203 nntaaatcaactagtcctt 221  Q
      |||||||||||||||||    
T  26534663 aataaatcaactagtcctt 26534645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 8323975 - 8323879
Alignment:
Q  101 atagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||| |||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  8323975 atagtgaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 8323879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 791592 - 791685
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||||||||||  |||||||||||  || ||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 791685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 130512 - 130395
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnn 203  Q
    |||||||| || ||||  |||||||||||  |||||| ||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||          
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcgttgttttcttttaaaataattataaaaaa 130413  T
Q  204 ntaaatcaactagtcctt 221  Q
     |||||||||||||||||    
T  130412 ataaatcaactagtcctt 130395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 33377912 - 33377820
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| || ||||  ||||||||||| ||||||| ||||||||||||||| | |||||||||||||| ||||| | ||||||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 33377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 42630952 - 42630878
Alignment:
Q  123 acgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||||  |||||| ||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||    
T  42630952 acgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcgttgttttcttttaaaataattat 42630878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 8489122 - 8489214
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||||| |||||||  ||| || |||| ||||||| ||||||||||||||| | ||| |||||||||| ||||| | |||||||||||||    
T  8489122 agagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtcattgttttattttaaaataatt 8489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 13823412 - 13823320
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| |||||||  ||||||| ||| |||||||  ||||||| |||||| | |||||||||||||| ||||| | ||||||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtcattgttttattttaaaataatta 13823320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 6518203 - 6518294
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | ||||||  || ||| ||||| | |||||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcatgtcattgttttattttaaaataatt 6518294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 19899018 - 19898927
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||||| |||||||  ||||||||||| |||||||  ||| |||||||||| | |||||||||| ||| ||||| | |||||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19898927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 26534506 - 26534581
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  |||||||||||  |||||  ||||||||||||||| | ||||||||||||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtt 26534581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 130253 - 130329
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||| |||||||  |||||||||||  | |||  ||||||||||||||| | ||||||||||||||||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcgttgtt 130329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 228717 - 228809
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||||  ||||||  ||||||||||| ||||||| |||| |||||| ||| | |||||||||||||  ||||| | ||||||||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgttattgttttattttaaaataatta 228809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 8323707 - 8323782
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  |||||||||||  ||||||  |||||||||| ||| | ||||||||||||||||||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcgttgtt 8323782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 42630711 - 42630786
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||| || |||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacacttcattgtt 42630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 35454451 - 35454519
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 35454519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 40882065 - 40881992
Alignment:
Q  122 aacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||| |||| ||||||| ||||||||||||||| | ||| |||||||||  ||||| | |||||||||||||    
T  40882065 aacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgttattgttttattttaaaataatt 40881992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 35454710 - 35454639
Alignment:
Q  107 aaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||| |||||    
T  35454710 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattgtt 35454639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 40881792 - 40881881
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||||| |||||||  ||||||||||| ||   || ||||||||||| ||| | |||||||||||||| ||||| | |||||||||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaacatt--attcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 40881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 19897228 - 19897293
Alignment:
Q  107 aaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    ||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||    
T  19897228 aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 19897293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 14069860 - 14069928
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgt 172  Q
    ||||||||| |||||||  |||||||||||  |||||| |||| |||||||||| | |||||||||||||    
T  14069860 agagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 14388583 - 14388515
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    |||||||| |||||||  ||| |||||||  |||||| ||||||||||||||| | ||||||||||||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 14388515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 5146504 - 5146571
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgt 172  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||| ||| | |||||||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt 5146571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 16115046 - 16115139
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||||||||||| |||||||||||  |||||| ||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 16115139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 42028578 - 42028695
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnn 203  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||          
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 42028677  T
Q  204 ntaaatcaactagtcctt 221  Q
     |||||||||||||||||    
T  42028678 ttaaatcaactagtcctt 42028695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 13280100 - 13280006
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||    
T  13280100 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgttttcttttaaaataattat 13280006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 2059750 - 2059655
Alignment:
Q  102 tagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||||||||| ||||||   |||||||||||  |||||| ||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||    
T  2059750 tagagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattat 2059655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 31860350 - 31860256
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||| |||||||  |||||||||||  || ||| ||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||    
T  31860350 agagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacatcgttgttttcttttaaaataattat 31860256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 36059352 - 36059278
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttg 177  Q
    ||||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||    
T  36059352 agagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttg 36059278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 7317900 - 7317806
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||| ||| | ||||||||||| | ||| || |||||||||||||||||    
T  7317900 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacattgtttttttcttttaaaataattat 7317806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 7317634 - 7317710
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||| |||||||||  |||||||||||  |||||| ||||| ||||||||| | ||||||||||||||||||||    
T  7317634 agagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcgttgtt 7317710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 15332927 - 15332851
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||| |||||||  ||||||||||| ||||||| ||||||||||| ||| | |||||||||||||| |||||    
T  15332927 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcattgtt 15332851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 31470587 - 31470678
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| |||||||  |||||||||||  ||||||  |||||||||||||| | |||||||||||||| ||||| | ||||||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 31470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 38086231 - 38086140
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||||||||||||   || ||||||| ||||||| ||||||||||||||| | ||| |||| ||||| ||||| | |||||||||||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtcattgttttattttaaaataatt 38086140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 42028842 - 42028767
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||| |||||||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtt 42028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 16115308 - 16115233
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||||||||||  |||||||||||  |||||| ||||||||||||||| | ||| ||||||| || |||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacacttcattgtt 16115233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacat 165  Q
    |||||||| |||||||  |||||||||||| |||||| ||||||||||||||| | ||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 31860079 - 31860148
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    |||||||| |||||||  |||||||||||  |||||| |||| |||||||||| | ||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc 31860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 38085967 - 38086038
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgtt 176  Q
    |||||||| |||||||  |||||| ||||  |||||| ||||||||||||||| | |||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 38086038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 3671822 - 3671886
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacac 170  Q
    ||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacac 3671886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 3672069 - 3671996
Alignment:
Q  122 aacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||| ||||||||||||  ||||||| |||||| | ||| || ||||||| ||||| | |||||||||||||    
T  3672069 aacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtcattgttttattttaaaataatt 3671996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 31470841 - 31470790
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaa 156  Q
    ||||||||||||||||  |||||||||||  |||||| |||||||||||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaa-ctatcattcttacaaacaacaaa 31470790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 33022431 - 33022339
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 33022339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 33022162 - 33022239
Alignment:
Q  102 tagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||||||||    
T  33022162 tagagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtt 33022239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 21389021 - 21389113
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| || ||||  ||||||||||| ||||||| ||||||||||||||| | |||||||| ||||| ||||| | ||||||||||||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatta 21389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 7789933 - 7789842
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||| |||||||  || |||||||| ||||||| ||||||||||||||| | |||||||||||||| ||||| | ||  ||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgtttttttaaaaaataatta 7789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 28472624 - 28472535
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataat 194  Q
    |||||||||| ||||  |||||||||||||||||||  ||| |||||||||| | || ||| ||||||  || || ||||||||||||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgttatttttttcttttaaaataat 28472535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 21389282 - 21389217
Alignment:
Q  107 aaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    ||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||    
T  21389282 aaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 21389217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 40534227 - 40534110
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnn 203  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||          
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 40534128  T
Q  204 ntaaatcaactagtcctt 221  Q
     |||||||||||||||||    
T  40534127 ttaaatcaactagtcctt 40534110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 3102804 - 3102687
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnn 203  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||||||||| | |||||||||||||||          
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtttttttttaaaataattataaaaaa 3102705  T
Q  204 ntaaatcaactagtcctt 221  Q
     |||||||||||||||||    
T  3102704 ttaaatcaactagtcctt 3102687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 18936944 - 18936850
Alignment:
Q  101 atagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||||||| |||| ||  ||||||||||||||||||| ||||||||||| ||| | |||||||||||||| ||||| | |||||||||||||    
T  18936944 atagagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtcattgttttattttaaaataatt 18936850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 173
Target Start/End: Original strand, 11147011 - 11147083
Alignment:
Q  101 atagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    ||||||||||| |||||||  ||||||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  11147011 atagagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 9231825 - 9231727
Alignment:
Q  123 acgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnnntaaatcaactagtcctt 221  Q
    ||||||||||  |||||| ||||||||||||||| | |||||||  ||||||||||| |||||||||||||||||       |||||||||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtcctt 9231727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 3102539 - 3102615
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||| |||||||||||    
T  3102539 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtt 3102615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 37177891 - 37177799
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||||| |||| ||  ||||||| ||| ||||||| ||||||||||||||| | |||||||| ||||| ||||| | |||||||||||||    
T  37177891 agagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtcattgttttattttaaaataatt 37177799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 40533962 - 40534038
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||| |||||||||||    
T  40533962 agagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcgttgtt 40534038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 13690216 - 13690290
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||| |||||||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcgttgtt 13690290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 5121072 - 5121005
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacac 170  Q
    ||||||||| |||||||  ||| ||||||| ||||||| ||||||||||||||| | |||||||||||    
T  5121072 agagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac 5121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 9231580 - 9231655
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  ||||||||||   || ||| ||||||||||||||| | ||||||||||||||||||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtt 9231655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 18381574 - 18381488
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaa 189  Q
    ||||||||| |||||||  ||||||||||| || |||| ||||||| ||||||| | ||||||||||| || ||||| | |||||||    
T  18381574 agagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacacatcattgttttattttaaa 18381488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 197
Target Start/End: Original strand, 33214441 - 33214536
Alignment:
Q  102 tagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  33214441 tagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 33214536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 36274126 - 36274212
Alignment:
Q  111 ttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||||||||  ||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  36274126 ttttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 36274212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 27073172 - 27073079
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 27073079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 36635502 - 36635410
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| |||||||  ||||||||||| |||||||  |||||||||||||| | |||||||||||||| ||||| | ||||||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 36635410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21379711 - 21379652
Alignment:
Q  1 tcacattacacaatatcatattttttacgacacagcccattgaatcaattaactaatcat 60  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  21379711 tcacgttacacaatatcatattttttacgacacagccctttggatcaattaactaatcat 21379652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 19580575 - 19580483
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||||| |||| ||  ||||||||||| ||||||| ||||||||||||||| | |||||||||| ||| ||||| | |||||||||||||    
T  19580575 agagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacatgtcattgttttattttaaaataatt 19580483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 33214704 - 33214628
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||| |||||||  |||||||||||  |||||  ||||||||||||||| | ||||||||||||||||||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcgttgtt 33214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 10598810 - 10598883
Alignment:
Q  106 gaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||| |||||||  |||||||||||  ||||||  |||||||||||||| | ||||||||||||||||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtt 10598883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 27072911 - 27072974
Alignment:
Q  102 tagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacat 165  Q
    |||||||||| |||||||  |||||||||||| |||||| ||||||||||||||| | ||||||    
T  27072911 tagagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatg 166  Q
    |||||||| ||||||  |||||||||||| ||||||| ||||||||||||||| | |||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 36274390 - 36274314
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||| || ||||  |||||| ||||  ||||||  |||||||||||||| | ||||||||||||||||||||    
T  36274390 agagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcgttgtt 36274314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 33219072 - 33219135
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatga 167  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 33219135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 37994972 - 37994855
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnn 203  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||          
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcgttgttttcttttaaaataattataaaaaa 37994873  T
Q  204 ntaaatcaactagtcctt 221  Q
     |||||||||||||||||    
T  37994872 ttaaatcaactagtcctt 37994855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 397270 - 397177
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||||| ||||||| |||||||||||| ||||||| |||| |||||||||| | |||||||||||||| ||||| | ||||||||||||||    
T  397270 agagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 397177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 41539768 - 41539861
Alignment:
Q  102 tagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | ||| |||||||||||||||| | |||||||||||||    
T  41539768 tagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcgttgttttattttaaaataatt 41539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 2814508 - 2814416
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | |||||||||||||| ||||| | ||| ||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttttttaaaaataatta 2814416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 44036833 - 44036889
Alignment:
Q  123 acgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    ||||||||||  |||||| ||||||||||||||| ||||||||||||||||||||||    
T  44036833 acgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcgttgtt 44036889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 25101748 - 25101823
Alignment:
Q  122 aacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||||||||||  |||||| ||| ||||||||||||| ||| ||||||| | |||||| |||||||||||||||||    
T  25101748 aacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacacattgttgttttcttttaaaataattat 25101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 41540035 - 41539963
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgtt 176  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||||||||    
T  41540035 agagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgtt 41539963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 14193323 - 14193414
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||||||||||| ||  ||||||||||| |||| ||  |||||||||||||| | ||||||||||| || ||||| | |||||||||||||    
T  14193323 agagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatt 14193414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 37994708 - 37994783
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||| ||| | |||||||| |||||||||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcgttgtt 37994783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 44037024 - 44036985
Alignment:
Q  158 tcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  44037024 tcaaacatgacacgtcgttgttttcttttaaaataattat 44036985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 176
Target Start/End: Original strand, 2814242 - 2814314
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgtt 176  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | || ||||||||||||||    
T  2814242 agagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgtt 2814314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 14193588 - 14193520
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 14193520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 10227712 - 10227805
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||||||| |||||||  |||||||||||  || ||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||    
T  10227712 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcgttgttttcttttaaaataattat 10227805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 221
Target Start/End: Complemental strand, 26552256 - 26552139
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnn 203  Q
    |||||||| |||||||  | |||||||||  |||||| ||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||          
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcgttgttttcttttaaaataattataaaaaa 26552157  T
Q  204 ntaaatcaactagtcctt 221  Q
     |||||||||||||||||    
T  26552156 ataaatcaactagtcctt 26552139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 50892963 - 50893055
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||||||||||||  ||||||| ||| ||||||| ||||||||||||||| | |||||||||||||| ||||| | ||||||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 50893055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 23346416 - 23346510
Alignment:
Q  101 atagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||||||| |||||||  ||||||||||| ||||||| ||||||||||| ||| | |||||||||||||| || || | |||||||||||||    
T  23346416 atagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtcatttttttattttaaaataatt 23346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 28217784 - 28217692
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||||| |||||||  ||||||||||| ||||||| |||||||||||||||   ||||||||||| || ||||| | |||||||||||||    
T  28217784 agagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacacatcattgttttattttaaaataatt 28217692  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 41833874 - 41833966
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| |||| || ||||||| |||||||||||| |||||| |||||||| | |||||||||||||| || || | ||||||||||||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtcattattttattttaaaataatta 41833966  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 50905175 - 50905107
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||||||| | |||||||| |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 50905107  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 39669321 - 39669230
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||| ||||||| |||||||| ||| ||||||| |||||||| |||||| | |||||||||||||  ||||| | ||||||||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgttattgttttattttaaaataatta 39669230  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 48871501 - 48871410
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    |||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | ||||||  |||||| ||||| | |||||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacattgcacgtcattgttttattttaaaataatt 48871410  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 19059378 - 19059449
Alignment:
Q  108 aatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtt 19059449  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 7062037 - 7062098
Alignment:
Q  134 atatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatt 195  Q
    ||||||| ||||||||||||||| | |||||||||||||| ||||| | |||||||||||||    
T  7062037 atatcattcttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatt 7062098  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 19059634 - 19059549
Alignment:
Q  112 tttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||  |||||||||||  |||||| |||| ||| |||||| | ||| ||||||| |||||||| |||||||||||||||||    
T  19059634 tttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacacatcgttgttttcttttaaaataattat 19059549  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 10227977 - 10227910
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacac 170  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||||||||    
T  10227977 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac 10227910  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 28217529 - 28217598
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    |||||||||  ||||||  |||||||||||| |||||| ||||||||||||||| | ||||||||||||||    
T  28217529 agagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtc 28217598  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 48752657 - 48752589
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 48752589  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 50904992 - 50905080
Alignment:
Q  105 agaaatttttgtgtaaaaacgaacctaatatat--catacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaat 191  Q
    ||||||| |||||||  ||||||||||||||||  |||  |||||||||||||  | |||||||||||||| ||||| | |||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtcattgttttattttaaaat 50905080  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 42180818 - 42180744
Alignment:
Q  121 aaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||| |||| ||||||| ||||||||||||||| | ||||||||||| || || || | ||||||||||||||    
T  42180818 aaacgaatctaa-atatcattcttacaaacaacaaactaaaacatgacacatcattattttattttaaaataatta 42180744  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 7062261 - 7062192
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    |||||||||||||||||  |||||||||||  ||||||  |||||||||||||| | ||| ||||||||||    
T  7062261 agagaaatttttgtgtaggaacgaacctaa-ctatcatttttacaaacaacaaattaaaatatgacacgtc 7062192  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 7298635 - 7298727
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| |||||||  ||||||||||| |||||||  |||||||||||||| | |||||||||||||| ||||| | ||||||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtcattgttttattttaaaataatta 7298727  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 40521280 - 40521188
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    |||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | ||||||||||| || ||||| | ||||||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacatcattgttttattttaaaataatta 40521188  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 19805679 - 19805585
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    ||||||||| |||||||  ||||||| |||  |||||| |||| ||| |||||| | |||||||||||||||||| | |||||||||||||||||    
T  19805679 agagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcgttgctttcttttaaaataattat 19805585  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 28949069 - 28949001
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    ||||||||||||||||  |||||||||||  |||||| ||||||||||| ||| | ||||||||||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtc 28949001  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 19804797 - 19804872
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  |||||||||||  ||| || ||||||||||||||| | ||||| ||||| ||||||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacacatcgttgtt 19804872  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 40521015 - 40521084
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtc 173  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||| ||||||||||    
T  40521015 agagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtc 40521084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 46568192 - 46568130
Alignment:
Q  134 atatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataatta 196  Q
    ||||||| ||||||||||||||| | ||||||||||| || ||||| | ||| ||||||||||    
T  46568192 atatcattcttacaaacaacaaattaaaacatgacacatcattgttttatttaaaaataatta 46568130  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 7298901 - 7298833
Alignment:
Q  103 agagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgt 172  Q
    ||||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | |||||| ||||||    
T  7298901 agagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

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Target: scaffold0135 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 37691 - 37593
Alignment:
Q  123 acgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattatnnnnnnntaaatcaactagtcctt 221  Q
    ||||||||||  |||||| ||||||||||||||| | |||||||  ||||||||||| |||||||||||||||||       |||||||||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatgctacgtcgttgttttcttttaaaataattataaaaaaataaatcaactagtcctt 37593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 37446 - 37521
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  ||||||||||   || ||| ||||||||||||||| | ||||||||||||||||||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcgttgtt 37521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 11891 - 11816
Alignment:
Q  104 gagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgtt 179  Q
    |||||||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||||||||||||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcgttgtt 11816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 11630 - 11719
Alignment:
Q  108 aatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgtcgttgttgtcttttaaaataattat 197  Q
    |||| |||||||  |||||||||||  |||||| ||||||||||||||| | ||| ||||||| || ||||| |||||||||||||||||    
T  11630 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacatcattgttttcttttaaaataattat 11719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 15844 - 15915
Alignment:
Q  101 atagagaaatttttgtgtaaaaacgaacctaatatatcatacttacaaacaacaaaatcaaacatgacacgt 172  Q
    ||||||||||| |||||||  ||||||||||| ||||||| ||||||||||||||| | |||||||||||||    
T  15844 atagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 15915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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