View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_69 (Length: 224)
Name: NF17596_low_69
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 48001123 - 48001011
Alignment:
| Q |
19 |
agtcagcttatctaaagcggggagagcctccagttccaatatatttgcctagaaaacaatcaccaaaaggaacatattatagaaaatcaacaaaaacaat |
118 |
Q |
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| T |
48001123 |
agtcaacttatctaaagcggggagagcctccaattccaaaatatttgcctagaaaacaatcaccaaaaggaacatattatagaaaatcaacaaaaacaat |
48001024 |
T |
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| Q |
119 |
caaacaataccta |
131 |
Q |
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||||||| ||||| |
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| T |
48001023 |
caaacaacaccta |
48001011 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 48000959 - 48000885
Alignment:
| Q |
136 |
tggttcctttctagttgtggactttttacatgtaccaaaacaaccaataaggtttgttacttctaatagaattat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48000959 |
tggttcctttctagttgtggactttttacatgtaccaaaacaaccaataagttttgttacttctaatagaattat |
48000885 |
T |
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