View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17596_low_71 (Length: 216)

Name: NF17596_low_71
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17596_low_71
NF17596_low_71
[»] chr6 (1 HSPs)
chr6 (148-197)||(10832650-10832699)
[»] chr7 (1 HSPs)
chr7 (96-143)||(40302557-40302605)
[»] chr8 (1 HSPs)
chr8 (106-142)||(15053590-15053626)
[»] chr4 (1 HSPs)
chr4 (108-144)||(13110518-13110554)
[»] chr5 (1 HSPs)
chr5 (108-140)||(42807079-42807111)
[»] chr1 (1 HSPs)
chr1 (108-140)||(48404288-48404320)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 10832699 - 10832650
Alignment:
Q  148 agagagaaatcaatttgacagtttatcttgaaattgtcagctcaatctct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10832699 agagagaaatcaatttgacagtttatcttgaaattgtcagctcaatctct 10832650  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 40302557 - 40302605
Alignment:
Q  96 tgggtgtcgag-attgttgaatatttgcgaccattgtaaatggtctaag 143  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  40302557 tgggtgtcgaggattgttgaatatttgtgaccattgtaaatggtctaag 40302605  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 15053626 - 15053590
Alignment:
Q  106 gattgttgaatatttgcgaccattgtaaatggtctaa 142  Q
    |||||||||||||||| ||||||||||||||||||||    
T  15053626 gattgttgaatatttgtgaccattgtaaatggtctaa 15053590  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 13110554 - 13110518
Alignment:
Q  108 ttgttgaatatttgcgaccattgtaaatggtctaagg 144  Q
    |||||||||||||| ||||||||||||||||||||||    
T  13110554 ttgttgaatatttgtgaccattgtaaatggtctaagg 13110518  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 42807079 - 42807111
Alignment:
Q  108 ttgttgaatatttgcgaccattgtaaatggtct 140  Q
    |||||||||||||| ||||||||||||||||||    
T  42807079 ttgttgaatatttgtgaccattgtaaatggtct 42807111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 48404320 - 48404288
Alignment:
Q  108 ttgttgaatatttgcgaccattgtaaatggtct 140  Q
    |||||||||||||| ||||||||||||||||||    
T  48404320 ttgttgaatatttgtgaccattgtaaatggtct 48404288  T

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