View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17596_low_73 (Length: 207)
Name: NF17596_low_73
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 9330291 - 9330115
Alignment:
| Q |
15 |
cagagaagatgacattgggctatttcatttgaaagaagaaaataacgaaaataccagcttccatacaaaaatgtctaatacctatagtaattttaattga |
114 |
Q |
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| T |
9330291 |
cagagaagatgacattgggctatttcatttgaaagaagaaaataacgaaaataccagcttccatacataaatgtctaatacctatagtaattttaattga |
9330192 |
T |
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| Q |
115 |
tacatttgattagtttattactcttcagttttgaacttttgatcatgtatgttgcatactagattcttggtagtttg |
191 |
Q |
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| T |
9330191 |
tacatttgattagtttattactcttcagttttgaacttttgatcatgtatgttgcatactagattcttggtagtttg |
9330115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 9357951 - 9357837
Alignment:
| Q |
20 |
aagatgacattgggctatttcatttgaaagaagaaaataacgaaaataccagcttccatacaaaaatgtctaatacctatagtaattttaattgatacat |
119 |
Q |
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||||||||||||| || ||||||| |||||||||| || |||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
9357951 |
aagatgacattggactgattcatttcaaagaagaaataaa--aaaagactagcttccatacaaaaatgtctgatacctttagtaattttaattgatacat |
9357854 |
T |
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| Q |
120 |
ttgattagtttattact |
136 |
Q |
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| T |
9357853 |
ctgattagtttattact |
9357837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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