View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17596_low_8 (Length: 598)
Name: NF17596_low_8
Description: NF17596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17596_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Complemental strand, 10119268 - 10118708
Alignment:
| Q |
20 |
atggtaagaaccgtatattttcatactaatagcttcatggtctaaacaaaaggcattgaatacaaaaacatgtttgatgatcaacaactttatcatatgt |
119 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10119268 |
atggtaagaaccttatattttcataccaatagcttcatggtctaaacaaaaggcattgaatacaataacatgtttgatgatcaacaactttatcatatgt |
10119169 |
T |
|
| Q |
120 |
gcacaaagaattgttatatcaatatgcattaagaactcaccatttgacacacgtgtgcaagggttacttctatgtctgctacatttatcttccacaaaga |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10119168 |
gcacaaagaattgttaattcaatatgcattaagaactcaccatttgacacacgtgtgcaagggttacttctatgtctgctacatttatcttccacaaaga |
10119069 |
T |
|
| Q |
220 |
attcaatataaatgtctcctgatcaggacgaatatgtgagtcaacattttcggggcaactaccacccatttcagattgcttgcggagttctttttgaagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10119068 |
attcaatataaatgtctcctgatcaggacgaatatgtgagtcaacattttcggggcaactaccacccgtttcagattgcttgcggagttctttttgaagt |
10118969 |
T |
|
| Q |
320 |
tggaacaactgataagcacctaaatcatatgtgcacattataatcaaacattgttctgactaactaacttccaataagaagaaactgacattaagggaag |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10118968 |
tggaacaactgataagcacctaaatcatatgtgcacattataatcaaacattgttctgactaactaacttccaataagaagaaactgacattaagggaag |
10118869 |
T |
|
| Q |
420 |
ggttgctaatggagatgtctgtcattatacctttagcagctgtaaactgtgatttccaataatgtcccttactgcaaacccattctgccagaaatagcac |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10118868 |
ggttgctaatggagatgtctgtcattatacctttagcagctgtaaactgtgatttccaataatgtcccttactgcaaacccattctgccagaaatggcac |
10118769 |
T |
|
| Q |
520 |
tcccagataaagggcatttttccctagttcttgtgctgcttggtttgaatatatatagcct |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10118768 |
tcccagataaagggcatttttccctagttcttgtgctgcttggtttgaatatatatagcct |
10118708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 145 - 579
Target Start/End: Complemental strand, 10125738 - 10125306
Alignment:
| Q |
145 |
gcattaagaactcaccatttgacacacgtgtgcaagggttacttctatgtctgctacatttatcttccacaaagaattcaatataaatgtctcctgatca |
244 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| | || ||||| | || | |
|
|
| T |
10125738 |
gcattaagaacttaccatttgacacacgtgtgcaagggttacttctatgtccactacattcaacttccacaaagaattcaaca-aagtgtct--ttatta |
10125642 |
T |
|
| Q |
245 |
ggacgaatatgtgagtcaacattttcggggcaactaccacccatttcagattgcttgcggagttctttttgaagttggaacaactgataagcacctaaat |
344 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| ||| | ||||||||| |||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
10125641 |
agacgaatatgggagtcaacattttcagggcaactaccacttgttttaaattgcttgctgagttcttcttgaagttggagcaactgaaaagcacctaaat |
10125542 |
T |
|
| Q |
345 |
catatgtgcacattataatcaaacattgttctgactaactaacttccaataagaagaaactgacatta-agggaagggttgctaatggagatgtctgtca |
443 |
Q |
| |
|
|||||||| ||| |||||||| ||||| |||||| |||||||||| ||| |||||| |||||| ||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
10125541 |
catatgtggacaatataatcatacatttttctgaataactaactttcaagaagaagcaactgatattttagggaaggcttgctaatgaagatgtctgtca |
10125442 |
T |
|
| Q |
444 |
ttatacctttagcagctgtaaactgtgatttccaataatgtcccttactgcaaacccattctgccagaaatagcactcccagataaagggcatttttccc |
543 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| ||| | | ||||||||| ||||||||| | ||||| ||||||||||| |||||||| |
|
|
| T |
10125441 |
ttatacctttagcagctgttaactgtgatttccaaaaatgtcctttattacgaacccattcggccagaaatggaactccaagataaagggcctttttccc |
10125342 |
T |
|
| Q |
544 |
tagttcttgtgctgcttggtttgaatatatatagcc |
579 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |
|
|
| T |
10125341 |
tagttcttgtgctgcttgtcttgagtatatatagcc |
10125306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University